SA11 Rotavirus Non-tripsinized Triple Layered Particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8olb
Q-score: 0.059
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
SA11 Rotavirus Trypsinized Triple Layered Particle
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8olc
Q-score: 0.289
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8ole
Q-score: 0.117
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
Cryo-EM reconstruction of VP5*/VP8* assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 8qtz
Q-score: 0.326
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ums
Q-score: 0.493
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]
- Outer capsid protein vp8* (26 kDa, Protein from Rotavirus)
- Rotavirus (Virus from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Fab 41 heavy chain (25 kDa, Protein from Homo sapiens)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Fab 41 (Complex from Homo sapiens)
- Fab 41 light chain (23 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rotavirus with fab bound (Complex)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7umt
Q-score: 0.52
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]
- Rotavirus (Virus from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
CryoEM structure of Rotavirus NSP2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7pko
Q-score: 0.442
Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2100198118 Pubmed: 34615715 ]
- Non-structural protein 2 (36 kDa, Protein from Rotavirus A)
- Rotavirus nsp2 rnp complex (Complex from Rotavirus)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7pkp
Q-score: 0.551
Bravo JPK, Bartnik K, Venditti L, Acker J, Gail EH, Colyer A, Davidovich C, Lamb DC, Tuma R, Calabrese AN, Borodavka A
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2100198118 Pubmed: 34615715 ]
- Non-structural protein 2 (36 kDa, Protein from Rotavirus A)
- Nsp2 rnp complex (Complex from Rotavirus)