CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7sfu
Q-score: 0.332
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Capsid protein (18 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7sfv
Q-score: 0.324
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab light chain (22 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (46 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hveev-63 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Capsid protein (17 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sfw
Q-score: 0.508
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212532 Pubmed: 35297953 ]
- Hveev-63 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab light chain (11 kDa, Protein from Homo sapiens)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffe
Q-score: 0.425
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7fff
Q-score: 0.48
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Low-density lipoprotein receptor class a domain-containing protein 3 (7 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Ldlrad3 (Complex)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ffl
Q-score: 0.466
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Low-density lipoprotein receptor class a domain-containing protein 3 (7 kDa, Protein from Homo sapiens)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Ldlrad3-d1 (Complex)
- Calcium ion (40 Da, Ligand)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ffn
Q-score: 0.506
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Ldlrad3 (Complex)
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Calcium ion (40 Da, Ligand)
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Complex from Homo sapiens)
- Low-density lipoprotein receptor class a domain-containing protein 3 (8 kDa, Protein from Homo sapiens)
Cryo-EM structure of VEEV VLP at the 5-fold axes
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffo
Q-score: 0.45
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Cryo-EM structure of VEEV VLP at the 2-fold axes
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ffq
Q-score: 0.382
Ma B, Huang C, Ma J, Xiang Y, Zhang X
Nature (2021) 598 pp. 677-681 [ DOI: doi:10.1038/s41586-021-03909-1 Pubmed: 34646021 ]
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Assembly protein e3 (6 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
Resolution: 17.0 Å
EM Method: Single-particle
Fitted PDBs: 4uom
Q-score: 0.009
Porta JC, Jose J, Roehrig JT, Blair CD, Kuhn RJ, Rossmann MG
J Virol (2014) 88 pp. 9616-9623 [ Pubmed: 24920796 DOI: doi:10.1128/JVI.01286-14 ]