Cryo-EM structure of the trimeric HerA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8yho
Q-score: 0.425
Cryo-EM structure of the trimeric HerA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8yhx
Q-score: 0.392
Zhen X, Zhou B, Liu Z, Wang X, Zhao H, Wu S, Li Z, Liang J, Zhang W, Zhu Q, He J, Xiong X, Ouyang S
Nat Commun (2024) 15 pp. 9269-9269 [ Pubmed: 39465277 DOI: doi:10.1038/s41467-024-53614-6 ]
- Duf87 domain-containing protein (65 kDa, Protein from Staphylococcus aureus)
- Sir2 family protein (50 kDa, Protein from Staphylococcus aureus)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Cryo-em structure of the trimeric hera (Complex from Staphylococcus aureus)
Structure of the smaller diameter PSMalpha3 nanotubes
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 7szz
Q-score: 0.448
Kreutzberger MAB, Wang S, Beltran LC, Tuachi A, Zuo X, Egelman EH, Conticello VP
PNAS (2022) 119 pp. e2121586119-e2121586119 [ DOI: doi:10.1073/pnas.2121586119 Pubmed: 35533283 ]
Structure of the larger diameter PSMalpha3 nanotube
Resolution: 4.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7t0x
Q-score: 0.392
Kreutzberger MAB, Wang S, Beltran LC, Tuachi A, Zuo X, Egelman EH, Conticello VP
PNAS (2022) 119 pp. e2121586119-e2121586119 [ DOI: doi:10.1073/pnas.2121586119 Pubmed: 35533283 ]
Structure of PSMbeta2 nanotubes
Resolution: 4.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 7t8u
Q-score: 0.39
Kreutzberger MAB, Wang S, Beltran LC, Tuachi A, Zuo X, Egelman EH, Conticello VP
PNAS (2022) 119 pp. e2121586119-e2121586119 [ Pubmed: 35533283 DOI: doi:10.1073/pnas.2121586119 ]
- Psmbeta2 nanotubes (Complex from Staphylococcus aureus)
- Antibacterial protein (4 kDa, Protein from Staphylococcus aureus)
1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease and priming loop ordered (Class2a)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7nha
Q-score: 0.475
Keown JR, Zhu Z, Carrique L, Fan H, Walker AP, Serna Martin I, Pardon E, Steyaert J, Fodor E, Grimes JM
Nat Commun (2022) 13 pp. 251-251 [ DOI: doi:10.1038/s41467-021-27950-w Pubmed: 35017564 ]
- 1918 influenza virus polymerase heterotirmer in complex with vrna promoters (Complex)
- Polymerase basic protein 2,immunoglobulin g-binding protein a (102 kDa, Protein from Staphylococcus aureus)
- Vrna promoters (Complex from synthetic construct)
- Polymerase acidic protein (82 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*ap*gp*up*ap*gp*ap*ap*ap*cp*ap*ap*gp*gp*cp*c)-3') (4 kDa, RNA from synthetic construct)
- 1918 influenza virus polymerase (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*gp*gp*cp*cp*up*gp*cp*u)-3') (5 kDa, RNA from synthetic construct)
1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease ordered (Class2b)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 7nhc
Q-score: 0.553
Keown JR, Zhu Z, Carrique L, Fan H, Walker AP, Serna Martin I, Pardon E, Steyaert J, Fodor E, Grimes JM
Nat Commun (2022) 13 pp. 251-251 [ DOI: doi:10.1038/s41467-021-27950-w Pubmed: 35017564 ]
- 1918 influenza virus polymerase heterotirmer in complex with vrna promoters (Complex)
- Polymerase basic protein 2,immunoglobulin g-binding protein a (102 kDa, Protein from Staphylococcus aureus)
- Vrna promoters (Complex from synthetic construct)
- Polymerase acidic protein (82 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*ap*gp*up*ap*gp*ap*ap*ap*cp*ap*ap*gp*gp*cp*c)-3') (4 kDa, RNA from synthetic construct)
- 1918 influenza virus polymerase (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*gp*gp*cp*cp*up*gp*cp*u)-3') (5 kDa, RNA from synthetic construct)
1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7nhx
Q-score: 0.406
Keown JR, Zhu Z, Carrique L, Fan H, Walker AP, Serna Martin I, Pardon E, Steyaert J, Fodor E, Grimes JM
Nat Commun (2022) 13 pp. 251-251 [ DOI: doi:10.1038/s41467-021-27950-w Pubmed: 35017564 ]
- Polymerase basic protein 2,immunoglobulin g-binding protein a (102 kDa, Protein from Staphylococcus aureus)
- Influenza virus polymerase heterotrimer (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- 1918 influenza virus polymerase heterotrimer in complex with vrna promoters (Complex)
- Rna (5'-r(p*gp*gp*cp*cp*up*gp*cp*u)-3') (5 kDa, RNA from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- Rna (5'-r(p*ap*gp*up*ap*gp*ap*ap*ap*cp*ap*ap*gp*gp*cp*c)-3') (4 kDa, RNA from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- Polymerase acidic protein (82 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Vrna promoters (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7ni0
Q-score: 0.385
Keown JR, Zhu Z, Carrique L, Fan H, Walker AP, Serna Martin I, Pardon E, Steyaert J, Fodor E, Grimes JM
Nat Commun (2022) 13 pp. 251-251 [ DOI: doi:10.1038/s41467-021-27950-w Pubmed: 35017564 ]
- Polymerase basic protein 2 (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*gp*gp*cp*cp*up*gp*cp*u)-3') (5 kDa, RNA from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- Polymerase acidic protein (82 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Polymerase acidic protein (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna-directed rna polymerase catalytic subunit (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Rna (5'-r(p*ap*gp*up*ap*gp*ap*ap*ap*cp*ap*ap*gp*gp*cp*c)-3') (4 kDa, RNA from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- Polymerase basic protein 2,immunoglobulin g-binding protein a (102 kDa, Protein from Staphylococcus aureus)
- Rna (Complex from Influenza A virus (strain A/Brevig Mission/1/1918 H1N1))
- 1918 influenza virus polymerase heterotirmer in complex with vrna promoters (Complex)