Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7dz7
Q-score: 0.567
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i subunit o (13 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7dz8
Q-score: 0.518
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i subunit o (13 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 7e0h
Q-score: 0.388
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7e0i
Q-score: 0.429
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7e0j
Q-score: 0.544
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll b (907 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7e0k
Q-score: 0.566
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Lhcii-2 in the state transition complex psi-lhci-lhcii from pph1;pbcp mutant of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem I of Chlamydomonas reinhardtii
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6ijj
Q-score: 0.537
Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2019) 5 pp. 273-281 [ DOI: doi:10.1038/s41477-019-0380-5 Pubmed: 30850819 ]
- Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psad (21 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
- Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
- Psal (27 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlamydomonas reinhardtii psi with eight light harvesting antennae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
- Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6ijo
Q-score: 0.469
Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2019) 5 pp. 273-281 [ DOI: doi:10.1038/s41477-019-0380-5 Pubmed: 30850819 ]
- Psah (17 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psag (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psal (27 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca9 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
- Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Psad (27 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Lhca2 (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlamydomonas reinhardtii psi with ten light harvesting antennae (Complex from Chlamydomonas reinhardtii)
- Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
- Chainx (1 kDa, Protein from Chlamydomonas reinhardtii)