Photosystem I reduced Plastocyanin Complex
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 6zoo
Q-score: 0.56
Caspy I, Fadeeva M, Kuhlgert S, Borovikova-Sheinker A, Klaiman D, Masrati G, Drepper F, Ben-Tal N, Hippler M, Nelson N
Biochem J (2021) 478 pp. 2371-2384 [ Pubmed: 34085703 DOI: doi:10.1042/BCJ20210267 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Garden pea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Garden pea)
- Chlorophyll a-b binding protein 3, chloroplastic (24 kDa, Protein from Garden pea)
- Putative uncharacterized protein (7 kDa, Protein from Garden pea)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Garden pea)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Garden pea)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Garden pea)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Plastocyanin, chloroplastic (10 kDa, Protein from Garden pea)
- Psal domain-containing protein (16 kDa, Protein from Garden pea)
- Chlorophyll a-b binding protein 6, chloroplastic (21 kDa, Protein from Garden pea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Psad (16 kDa, Protein from Garden pea)
- Photosystem i reaction center subunit vi,photosystem i reaction center subunit vi (10 kDa, Protein from Garden pea)
- Chlorophyll a-b binding protein p4, chloroplastic (21 kDa, Protein from Garden pea)
- Copper (ii) ion (63 Da, Ligand)
- Photosystem i plastocyanin complex (650 kDa, Complex from Pisum sativum)
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Garden pea)
- Photosystem i reaction center subunit x psak (8 kDa, Protein from Garden pea)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center (10 kDa, Protein from Garden pea)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Garden pea)
Cryo-EM map of the ATP synthase complex from P. sativum
Nat Plants (2021) 7 pp. 514-523 [ DOI: doi:10.1038/s41477-021-00896-z Pubmed: 33875833 ]
- Atp synthase (Complex from Pisum sativum)
Cryo-EM map of the chloroplast ribosome from P. sativum
Nat Plants (2021) 7 pp. 514-523 [ DOI: doi:10.1038/s41477-021-00896-z Pubmed: 33875833 ]
PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6yp7
Q-score: 0.382
Grinzato A, Albanese P, Marotta R, Swuec P, Saracco G, Bolognesi M, Zanotti G, Pagliano C
Int J Mol Sci (2020) 21 [ DOI: doi:10.3390/ijms21228643 Pubmed: 33207833 ]
- Chlorophyll a-b binding protein 8, chloroplastic (23 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein w (5 kDa, Protein from Pisum sativum)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb4.3 (24 kDa, Protein from Pisum sativum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psii-lhcii c2s2 supercomplex (Complex from Pisum sativum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Oxygen-evolving enhancer protein 1, chloroplastic (26 kDa, Protein from Pisum sativum)
- Chlorophyll b (907 Da, Ligand)
- Cytochrome b559 subunit beta (3 kDa, Protein from Pisum sativum)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Pisum sativum)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii protein d1 (36 kDa, Protein from Pisum sativum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Ultraviolet-b-repressible protein (3 kDa, Protein from Pisum sativum)
- Cytochrome b559 subunit alpha (8 kDa, Protein from Pisum sativum)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein j (3 kDa, Protein from Pisum sativum)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Pisum sativum)
- Photosystem ii d2 protein (38 kDa, Protein from Pisum sativum)
- Photosystem ii cp47 reaction center protein (55 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein h (6 kDa, Protein from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb5, cp26 (23 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein i (3 kDa, Protein from Pisum sativum)
- Beta-carotene (536 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Pisum sativum)
stacked PSII-LHCII C2S2 supercomplexes from Pisum sativum grown in High light conditions
Grinzato A, Albanese P, Marotta R, Swuec P, Saracco G, Bolognesi M, Zanotti G, Pagliano C
Int J Mol Sci (2020) 21 [ Pubmed: 33207833 DOI: doi:10.3390/ijms21228643 ]
stacked PSII-LHCII C2S2M supercomplexes from Pisum sativum grown in High light conditions
Grinzato A, Albanese P, Marotta R, Swuec P, Saracco G, Bolognesi M, Zanotti G, Pagliano C
Int J Mol Sci (2020) 21 [ DOI: doi:10.3390/ijms21228643 Pubmed: 33207833 ]
stacked PSII-LHCII C2S2M2 supercomplexes from Pisum sativum grown in Low light conditions
Grinzato A, Albanese P, Marotta R, Swuec P, Saracco G, Bolognesi M, Zanotti G, Pagliano C
Int J Mol Sci (2020) 21 [ DOI: doi:10.3390/ijms21228643 Pubmed: 33207833 ]
Grinzato A, Albanese P, Marotta R, Swuec P, Saracco G, Bolognesi M, Zanotti G, Pagliano C
Int J Mol Sci (2020) 21 [ DOI: doi:10.3390/ijms21228643 Pubmed: 33207833 ]
Plant PSI-ferredoxin supercomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6yac
Q-score: 0.601
Caspy I, Borovikova-Sheinker A, Klaiman D, Shkolnisky Y, Nelson N
Nat Plants (2020) 6 pp. 1300-1305 [ DOI: doi:10.1038/s41477-020-00779-9 Pubmed: 33020607 ]
- Photosystem i iron-sulfur center (8 kDa, Protein from Pea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein p4, chloroplastic (21 kDa, Protein from Pea)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Pea)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Pea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein 3, chloroplastic (24 kDa, Protein from Pea)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Pea)
- Chlorophyll b (907 Da, Ligand)
- Psad (16 kDa, Protein from Pea)
- Water (18 Da, Ligand)
- Lhca1 (21 kDa, Protein from Pea)
- Pea photosystem i in complex with ferredoxin (660 kDa, Complex from Pisum sativum)
- Psal (16 kDa, Protein from Pea)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Pea)
- Psae (7 kDa, Protein from Pea)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Psag (10 kDa, Protein from Pea)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Photosystem i reaction center subunit x psak (8 kDa, Protein from Pea)
- Psah (9 kDa, Protein from Pea)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Pea)
- Ferredoxin-1, chloroplastic (10 kDa, Protein from Pea)
- Phylloquinone (450 Da, Ligand)
- Psaf (17 kDa, Protein from Pea)
- Iron/sulfur cluster (351 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)