CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8u44
Q-score: 0.387
McIntire KM, Meng H, Lin TH, Kim W, Moore NE, Han J, McMahon M, Wang M, Malladi SK, Mohammed BM, Zhou JQ, Schmitz AJ, Hoehn KB, Carreno JM, Yellin T, Suessen T, Middleton WD, Teefey SA, Presti RM, Krammer F, Turner JS, Ward AB, Wilson IA, Kleinstein SH, Ellebedy AH
J Exp Med (2024) 221 [ DOI: doi:10.1084/jem.20240668 Pubmed: 38935072 ]
- Ha (Complex from Homo sapiens)
- Fab (Complex from Homo sapiens)
- Immune complex of a/solomon islands/3/2006 h1 ha with fab 3c10 (Complex from Homo sapiens)
- 05.gc.w2.3c10-h1_si06 light chain (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha2 chain (26 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 chain (40 kDa, Protein from Influenza A virus)
- 05.gc.w2.3c10-h1_si06 heavy chain (25 kDa, Protein from Homo sapiens)
H1 Solomon Islands 2006 hemagglutinin in complex with Ab36
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7umn
Q-score: 0.467
To Be Published
- Hemagglutinin (Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Ab36 fab heavy chain, ab36 fab light chain (Complex from Mus musculus)
- Hemagglutinin h1 solomon islands/03/2006 in complex with ab109 fab (Complex)
- Ab36 fab heavy chain (25 kDa, Protein from Mus musculus)
- Ab36 fab light chain (23 kDa, Protein from Mus musculus)
- Hemagglutinin (58 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
H1 Solomon Islands 2006 hemagglutinin in complex with Ab111
Caradonna TM, Ronsard L, Yousif AS, Windsor IW, Hecht R, Bracamonte-Moreno T, Roffler AA, Maron MJ, Maurer DP, Feldman J, Marchiori E, Barnes RM, Rohrer D, Lonberg N, Sempowski GD, Kepler TB, Kuraoka M, Lingwood D, Schmidt AG
Cell Rep (2022) 41 pp. 111628-111628 [ DOI: doi:10.1016/j.celrep.2022.111628 Pubmed: 36351401 ]
H1 Solomon Islands 2006 hemagglutinin in complex with Ab109
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 7umm
Q-score: 0.51
Caradonna TM, Ronsard L, Yousif AS, Windsor IW, Hecht R, Bracamonte-Moreno T, Roffler AA, Maron MJ, Maurer DP, Feldman J, Marchiori E, Barnes RM, Rohrer D, Lonberg N, Oguin 3rd TH, Sempowski GD, Kepler TB, Kuraoka M, Lingwood D, Schmidt AG
Cell Rep (2022) 41 pp. 111628-111628 [ DOI: doi:10.1016/j.celrep.2022.111628 Pubmed: 36351401 ]
- Hemagglutinin (Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Ab109 fab heavy chain, ab 109 fab light chain (Complex from Mus musculus)
- Hemagglutinin h1 solomon islands/03/2006 in complex with ab109 fab (Complex)
- Ab109 fab heavy chain (23 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab109 fab light chain (23 kDa, Protein from Mus musculus)
- Hemagglutinin (58 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 6xsk
Q-score: 0.406
Moin SM, Boyington JC, Boyoglu-Barnum S, Gillespie RA, Cerutti G, Cheung CS, Cagigi A, Gallagher JR, Brand J, Prabhakaran M, Tsybovsky Y, Stephens T, Fisher BE, Creanga A, Ataca S, Rawi R, Corbett KS, Crank MC, Karlsson Hedestam GB, Gorman J, McDermott AB, Harris AK, Zhou T, Kwong PD, Shapiro L, Mascola JR, Graham BS, Kanekiyo M
Immunity (2022) 55 pp. 2405-2418.e7 [ DOI: doi:10.1016/j.immuni.2022.10.015 Pubmed: 36356572 ]
- 789-203-3c12 fab heavy and light chains (Cellular component from Macaca mulatta)
- 789-203-3c12 fab heavy chain (49 kDa, Protein from Macaca mulatta)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- 789-203-3c12 fab light chain (23 kDa, Protein from Macaca mulatta)
- Influenza hemagglutinin (Cellular component from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Influenza hemagglutinin si06 trimer in complex with 789-203-3c12 fab (Cellular component)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 5ujz
Q-score: 0.224
Liu Y, Pan J, Jenni S, Raymond DD, Caradonna T, Do KT, Schmidt AG, Harrison SC, Grigorieff N
J Mol Biol (2017) 429 pp. 1829-1839 [ DOI: doi:10.1016/j.jmb.2017.05.011 Pubmed: 28506635 ]
- Scfv (27 kDa, Protein from Homo sapiens)
- Influenza-virus hemagglutinin h1 complexed with k1915 single-chain variable-domain fragment (320 kDa, Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Hemagglutinin ha2 (19 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 (36 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 5uk0
Q-score: 0.226
Liu Y, Pan J, Jenni S, Raymond DD, Caradonna T, Do KT, Schmidt AG, Harrison SC, Grigorieff N
J Mol Biol (2017) 429 pp. 1829-1839 [ Pubmed: 28506635 DOI: doi:10.1016/j.jmb.2017.05.011 ]
- Hemagglutinin ha2 (19 kDa, Protein from Influenza A virus)
- Scfv (27 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha1 (36 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Influenza-virus hemagglutinin h1 complexed with k1915 single-chain variable-domain fragment (320 kDa, Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 5uk1
Q-score: 0.174
Liu Y, Pan J, Jenni S, Raymond DD, Caradonna T, Do KT, Schmidt AG, Harrison SC, Grigorieff N
J Mol Biol (2017) 429 pp. 1829-1839 [ Pubmed: 28506635 DOI: doi:10.1016/j.jmb.2017.05.011 ]
- Hemagglutinin ha2 (19 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Scfv (27 kDa, Protein from Homo sapiens)
- Hemagglutinin ha1 (36 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Influenza-virus hemagglutinin h1 complexed with k1915 single-chain variable-domain fragment (320 kDa, Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 5uk2
Q-score: 0.271
Liu Y, Pan J, Jenni S, Raymond DD, Caradonna T, Do KT, Schmidt AG, Harrison SC, Grigorieff N
J Mol Biol (2017) 429 pp. 1829-1839 [ DOI: doi:10.1016/j.jmb.2017.05.011 Pubmed: 28506635 ]
- Scfv (27 kDa, Protein from Homo sapiens)
- Influenza-virus hemagglutinin h1 complexed with k1915 single-chain variable-domain fragment (320 kDa, Complex from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- Hemagglutinin ha2 (19 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 (36 kDa, Protein from Influenza A virus (A/Solomon Islands/3/2006(H1N1)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Negative Stain EM of C05 mutant Fab (VPGSGW) and CR9114 Fab in complex with H1 HA Trimer