Cryo-EM structure of the Sec complex from T. lanuginosus, wild-type, class without Sec62
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7kak
Q-score: 0.385
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
Cryo-EM structure of the Sec complex from T. lanuginosus lacking Sec62
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7kan
Q-score: 0.429
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus without sec62 (Complex from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
Cryo-EM structure of the Sec complex from T. lanuginosus, Sec62 anchor domain mutant (delta anchor)
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec72 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (Protein from Thermomyces lanuginosus)
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec72 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (Protein from Thermomyces lanuginosus)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7kal
Q-score: 0.378
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (44 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kam
Q-score: 0.419
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (44 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
15.3A eEF2-80S Ribosome Transition State Complex by Cryo-electron Microscopy
Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J
J Mol Biol (2008) 382 pp. 179-187 [ Pubmed: 18644383 DOI: doi:10.1016/j.jmb.2008.07.004 ]
A 12.6A cryo-EM map of the 80S.eEF2.AlF4-GDP complex
Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J
J Mol Biol (2008) 382 pp. 179-187 [ Pubmed: 18644383 DOI: doi:10.1016/j.jmb.2008.07.004 ]
Segmented eEF2 density from the cryo-EM map of eEF2-bound 80S complex
Resolution: 12.6 Å
EM Method: Single-particle
Fitted PDBs: 3dny, 3dwu
Q-score: 0.006
Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J
J Mol Biol (2008) 382 pp. 179-187 [ Pubmed: 18644383 DOI: doi:10.1016/j.jmb.2008.07.004 ]
Structure of fungal fatty acid synthase and implications for iterative substrate shuttling.
Jenni S, Leibundgut M, Boehringer D, Frick C, Mikolasek B, Ban N
Science (2007) 316 pp. 254-261 [ DOI: doi:10.1126/science.1138248 Pubmed: 17431175 ]