Cryo-EM structure of the Sec complex from T. lanuginosus, wild-type, class without Sec62
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7kak
Q-score: 0.385
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
Cryo-EM structure of the Sec complex from T. lanuginosus lacking Sec62
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7kan
Q-score: 0.429
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus without sec62 (Complex from Thermomyces lanuginosus)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7kal
Q-score: 0.378
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (44 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kam
Q-score: 0.419
Itskanov S, Kuo KM, Gumbart JC, Park E
Nat Struct Mol Biol (2021) 28 pp. 162-172 [ Pubmed: 33398175 DOI: doi:10.1038/s41594-020-00541-x ]
- Protein transport protein sec66/sec71 (27 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec72 (23 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec63 (79 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, gamma subunit (sss1) (7 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, beta subunit (sbh1) (12 kDa, Protein from Thermomyces lanuginosus)
- Protein transport channel sec61 complex, alpha subunit (sec61) (52 kDa, Protein from Thermomyces lanuginosus)
- Protein transport protein sec62 (44 kDa, Protein from Thermomyces lanuginosus)
- Endoplasmic reticulum protein-transport machinery sec complex from t. lanuginosus (Complex from Thermomyces lanuginosus)
Segmented eEF2 density from the cryo-EM map of eEF2-bound 80S complex
Resolution: 12.6 Å
EM Method: Single-particle
Fitted PDBs: 3dny, 3dwu
Q-score: 0.006
Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J
J Mol Biol (2008) 382 pp. 179-187 [ DOI: doi:10.1016/j.jmb.2008.07.004 Pubmed: 18644383 ]
Resolution: 11.3 Å
EM Method: Single-particle
Fitted PDBs: 2p8w
Q-score: 0.066
Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J
EMBO J (2007) 26 pp. 2421-2431 [ Pubmed: 17446867 DOI: doi:10.1038/sj.emboj.7601677 ]
- Thermomyces lanuginosus 80s ribosome (3 MDa, Sample)
- Thermomyces lanuginosus (3 MDa, Complex)
- Trna (RNA from Thermomyces lanuginosus)
- Eef2 (93 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 9.7 Å
EM Method: Single-particle
Fitted PDBs: 2p8x
Q-score: 0.068
Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J
EMBO J (2007) 26 pp. 2421-2431 [ Pubmed: 17446867 DOI: doi:10.1038/sj.emboj.7601677 ]
- Thermomyces lanuginosus 80s ribosome (3 MDa, Sample)
- Thermomyces lanuginosus (3 MDa, Complex)
- Adpr-eef2 (93 kDa, Protein from Saccharomyces cerevisiae)
- Trna (RNA from Thermomyces lanuginosus)
Resolution: 11.7 Å
EM Method: Single-particle
Fitted PDBs: 2p8y
Q-score: 0.056
Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J
EMBO J (2007) 26 pp. 2421-2431 [ Pubmed: 17446867 DOI: doi:10.1038/sj.emboj.7601677 ]
- Thermomyces lanuginosus 80s ribosome (3 MDa, Sample)
- Thermomyces lanuginosus (3 MDa, Complex)
- Adpr-eef2 (93 kDa, Protein from Saccharomyces cerevisiae)
- Trna (RNA from Thermomyces lanuginosus)
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 2p8z
Q-score: 0.082
Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J
EMBO J (2007) 26 pp. 2421-2431 [ Pubmed: 17446867 DOI: doi:10.1038/sj.emboj.7601677 ]
- Thermomyces lanuginosus 80s ribosome (3 MDa, Sample)
- Thermomyces lanuginosus (3 MDa, Complex)
- Adpr-eef2 (93 kDa, Protein from Saccharomyces cerevisiae)
- Trna (RNA from Thermomyces lanuginosus)