Structure of an STK19-containing TC-NER complex
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9bz0
Q-score: 0.448
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Det1- and ddb1-associated protein 1 (12 kDa, Protein from Homo sapiens)
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Uv-stimulated scaffold protein a (80 kDa, Protein from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Inactive serine/threonine-protein kinase 19 (28 kDa, Protein from Homo sapiens)
- Transcription elongation factor 1 homolog (9 kDa, Protein from Homo sapiens)
- Dna excision repair protein ercc-8 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (142 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Dna (35-mer) (27 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit (218 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Rna polymerase rpb4/rpc9 core domain-containing protein (16 kDa, Protein from Sus scrofa)
- Rna (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*gp*a)-3') (3 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Sus scrofa)
- Dna excision repair protein ercc-6 (168 kDa, Protein from Homo sapiens)
- Dna (49-mer) (27 kDa, DNA from synthetic construct)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map IV)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map III)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map II)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map V)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VI)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csa, ddb1 (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VIII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (Consensus refinement)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Csb, uvssa (Complex from Homo sapiens)