RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9egy
Q-score: 0.256
Markert JW, Soffers JH, Farnung L
Science (2025) 387 pp. 528-533 [ DOI: doi:10.1126/science.adn6319 Pubmed: 39666822 ]
- Protein iws1 homolog (92 kDa, Protein from Homo sapiens)
- Transcription elongation factor a protein 1 (34 kDa, Protein from Homo sapiens)
- Parafibromin (60 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Non-template dna (63 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Rna (6 kDa, RNA from synthetic construct)
- Rna polymerase-associated protein rtf1 homolog (80 kDa, Protein from Homo sapiens)
- Setd2 downstream complex (Complex from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Template dna (66 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Wdr61 (33 kDa, Protein from Homo sapiens)
- Transcription elongation factor spt6 (199 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (142 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein ctr9 homolog (134 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Rna polymerase rpb4/rpc9 core domain-containing protein (16 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein leo1 (75 kDa, Protein from Homo sapiens)
- Transcription elongation factor spt5 (121 kDa, Protein from Homo sapiens)
- Rna polymerase ii-associated factor 1 homolog (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Transcription elongation factor spt4 (13 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Sus scrofa)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna-directed rna polymerase subunit (219 kDa, Protein from Sus scrofa)
RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 20 bp upstream
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9eh1
Q-score: 0.237
Markert JW, Soffers JH, Farnung L
Science (2025) 387 pp. 528-533 [ DOI: doi:10.1126/science.adn6319 Pubmed: 39666822 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Transcription elongation factor spt6 (117 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit k (5 kDa, Protein from Sus scrofa)
- Histone h4 (8 kDa, Protein from Xenopus laevis)
- Rna polymerase-associated protein leo1 (14 kDa, Protein from Homo sapiens)
- Non-template dna (52 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit (173 kDa, Protein from Sus scrofa)
- Setd2 downstream complex (Complex from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (8 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (13 kDa, Protein from Sus scrofa)
- Transcription elongation factor spt5 (57 kDa, Protein from Homo sapiens)
- Rna polymerase-associated protein rtf1 homolog (29 kDa, Protein from Homo sapiens)
- Superkiller complex protein 8, n-terminally processed (33 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb3 (30 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein ctr9 homolog (102 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit (19 kDa, Protein from Sus scrofa)
- Template dna (56 kDa, DNA from synthetic construct)
- Rna polymerase ii-associated factor 1 homolog (28 kDa, Protein from Homo sapiens)
- Transcription elongation factor a protein 1 (19 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Parafibromin (5 kDa, Protein from Homo sapiens)
- Rna (3 kDa, RNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Histone-lysine n-methyltransferase setd2 (67 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (132 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb11-a (13 kDa, Protein from Sus scrofa)
- Protein iws1 homolog (14 kDa, Protein from Homo sapiens)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Transcription elongation factor spt4 (13 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Rna polymerase rpb4/rpc9 core domain-containing protein (14 kDa, Protein from Sus scrofa)
HURP(65-174) bound to GMPCPP-stabilized microtubule
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9duq
Q-score: 0.479
Valdez VA, Ma M, Gouveia B, Zhang R, Petry S
Nat Commun (2024) 15 pp. 9689-9689 [ DOI: doi:10.1038/s41467-024-53630-6 Pubmed: 39516491 ]
- Magnesium ion (24 Da, Ligand)
- Hurp(65-174) bound to gmpcpp-stabilized microtubule (Complex from Sus scrofa)
- Disks large-associated protein 5 (5 kDa, Protein from Homo sapiens)
- Tubulin beta chain (47 kDa, Protein from Sus scrofa)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha chain (48 kDa, Protein from Sus scrofa)
Microtubule-associated kinesin-1 tail complex bound to AMPPNP, single-headed state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8rhb
Q-score: 0.064
Atherton J, Chegkazi MS, Peirano E, Pozzer LS, Foran T, Steiner RA
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.11.622991 ]
- 13pf microtubule bound to kif5bmoneiak in the presence of amppnp (246 MDa, Complex)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- 13pf microtubule (Complex from Sus scrofa)
- Kinesin-1 heavy chain (109 kDa, Protein from Homo sapiens)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin-1 heavy chain (Complex from Homo sapiens)
- Taxol (853 Da, Ligand)
Microtubule-associated kinesin-1 tail complex bound to AMPPNP, two-headed state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8rhh
Q-score: 0.462
Atherton J, Chegkazi MS, Peirano E, Pozzer LS, Foran T, Steiner RA
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.11.622991 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- 13pf microtubule bound to kif5bmoneiak in the presence of amppnp (two-headed state) (246 MDa, Complex)
- 13pf microtubule (Complex from Sus scrofa)
- Kinesin-1 heavy chain (109 kDa, Protein from Homo sapiens)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin-1 heavy chain (Complex from Homo sapiens)
- Taxol (853 Da, Ligand)
Microtubule-associated kinesin-1 tail complex bound to ADP, single-headed state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8rik
Q-score: 0.525
Atherton J, Chegkazi MS, Peirano E, Pozzer LS, Foran T, Steiner RA
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.11.622991 ]
- Kinesin-1 heavy chain (109 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 13pf microtubule bound to kif5bmoneiak in the presence of adp (246 MDa, Complex)
- Taxol (853 Da, Ligand)
- Kinesin-1 heavy chain (Complex from Homo sapiens)
- 13pf microtubule (Complex from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Microtubule-associated kinesin-1 tail complex bound to ADP, two-headed state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8riz
Q-score: 0.421
Atherton J, Chegkazi MS, Peirano E, Pozzer LS, Foran T, Steiner RA
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.11.622991 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- 13pf microtubule (Complex from Sus scrofa)
- Kinesin-1 heavy chain (109 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 13pf microtubule bound to kif5bmoneiak in the presence of adp (two-headed state) (246 MDa, Complex)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin-1 heavy chain (Complex from Homo sapiens)
- Taxol (853 Da, Ligand)
Microtubule-associated Kif5B IAK tail mutant bound to ADP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9gnq
Q-score: 0.54
Atherton J, Chegkazi MS, Peirano E, Pozzer LS, Foran T, Steiner RA
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.11.622991 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Alpha-tubulin (Complex from Sus scrofa)
- Kinesin-1 heavy chain (44 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kif5bmonexxx bound with adp (Complex from Homo sapiens)
- Taxol (853 Da, Ligand)
- 13pf microtubule bound to kif5bmonexxx in the presence of adp (246 MDa, Complex)
- Beta tubulin (Complex from Sus scrofa)
Structure of the Native CMG-decorated gamma-Tubulin Ring Complex from Pig Brain
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 9g3y
Q-score: 0.197
Xu Y, Munoz-Hernandez H, Krutyholowa R, Marxer F, Cetin F, Wieczorek M
Dev Cell (2024) 59 pp. 3161- [ DOI: doi:10.1016/j.devcel.2024.09.002 Pubmed: 39321808 ]
- Gamma-tubulin ring complex in native pig brain (Complex from Sus scrofa)
- Mitotic spindle organizing protein 1 (8 kDa, Protein from Sus scrofa)
- Cdk5 regulatory subunit-associated protein 2 (189 kDa, Protein from Homo sapiens)
- Mitotic-spindle organizing protein 2a isoform x4 (15 kDa, Protein from Sus scrofa)
- Tubulin gamma complex associated protein 6 (188 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component 3 (103 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (76 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (122 kDa, Protein from Sus scrofa)
- Tubulin gamma chain (51 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (102 kDa, Protein from Sus scrofa)
Structure of the Open gamma-Tubulin Ring Complex from Pig Brain
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9g3z
Q-score: 0.205
Xu Y, Munoz-Hernandez H, Krutyholowa R, Marxer F, Cetin F, Wieczorek M
Dev Cell (2024) 59 pp. 3161- [ DOI: doi:10.1016/j.devcel.2024.09.002 Pubmed: 39321808 ]
- Mitotic spindle organizing protein 1 (8 kDa, Protein from Sus scrofa)
- Cdk5 regulatory subunit-associated protein 2 (189 kDa, Protein from Homo sapiens)
- Mitotic-spindle organizing protein 2a isoform x4 (15 kDa, Protein from Sus scrofa)
- Tubulin gamma complex associated protein 6 (188 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component 3 (103 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (102 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (120 kDa, Protein from Sus scrofa)
- Gamma-tubulin complex component (76 kDa, Protein from Sus scrofa)
- Tubulin gamma chain (51 kDa, Protein from Sus scrofa)
- Gamma-tubulin ring complex from native pig brain (Complex from Sus scrofa)