Cytoplasmic dynein-A heavy chain bound to dynactin-p150glued and IC-LC tower
Resolution: 9.4 Å
EM Method: Single-particle
Fitted PDBs: 8pr0
Q-score: 0.169
Singh K, Lau CK, Manigrasso G, Gama JB, Gassmann R, Carter AP
Science (2024) 383 pp. eadk8544-eadk8544 [ Pubmed: 38547289 DOI: doi:10.1126/science.adk8544 ]
- Dynactin subunit 1 (142 kDa, Protein from Sus scrofa)
- Cytoplasmic dynein-a heavy chain bound to dynactin p150 and ic-lc tower (Complex from Homo sapiens)
- Cytoplasmic dynein 1 light intermediate chain 2 (54 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 intermediate chain 2 (68 kDa, Protein from Homo sapiens)
- Dynein light chain tctex-type 1 (12 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 heavy chain 1 (533 kDa, Protein from Homo sapiens)
- Dynein light chain 1, cytoplasmic (10 kDa, Protein from Homo sapiens)
Composite structure of Dynein-Dynactin-JIP3-LIS1
Resolution: 10.0 Å
EM Method: Single-particle
Fitted PDBs: 8ptk
Q-score: 0.202
Singh K, Lau CK, Manigrasso G, Gama JB, Gassmann R, Carter AP
Science (2024) 383 pp. eadk8544-eadk8544 [ Pubmed: 38547289 DOI: doi:10.1126/science.adk8544 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dynactin subunit 4 (52 kDa, Protein from Sus scrofa)
- C-jun-amino-terminal kinase-interacting protein 3 (65 kDa, Protein from Homo sapiens)
- F-actin-capping protein subunit beta (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Dynactin subunit 3 (21 kDa, Protein from Sus scrofa)
- Dynactin subunit 1 (142 kDa, Protein from Sus scrofa)
- Cytoplasmic dynein 1 heavy chain 1 (533 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Capping protein (actin filament) muscle z-line, alpha 1 (33 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dynactin subunits (Complex from Sus scrofa)
- Dynein and jip3 (Complex from Homo sapiens)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Arp11 (46 kDa, Protein from Sus scrofa)
- Dynactin subunit 2 (44 kDa, Protein from Sus scrofa)
- Dynactin 6 (20 kDa, Protein from Sus scrofa)
- Dynein light chain roadblock-type 1 (10 kDa, Protein from Homo sapiens)
- Composite structure of dynein-dynactin-jip3-lis1 (Complex)
- Cytoplasmic dynein 1 intermediate chain 2 (68 kDa, Protein from Homo sapiens)
- Cytoplasmic dynein 1 light intermediate chain 2 (54 kDa, Protein from Homo sapiens)
- Platelet-activating factor acetylhydrolase ib subunit beta (46 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dynein light chain tctex-type 1 (12 kDa, Protein from Homo sapiens)
- Arp1 actin related protein 1 homolog a (42 kDa, Protein from Sus scrofa)
- Dynein light chain 1, cytoplasmic (10 kDa, Protein from Homo sapiens)
- Dynactin subunit 5 (20 kDa, Protein from Sus scrofa)
Resolution: 8.52 Å
EM Method: Single-particle
Fitted PDBs: 8wal
Q-score: 0.084
Chen X, Liu W, Wang Q, Wang X, Ren Y, Qu X, Li W, Xu Y
Science (2023) 382 pp. eadi5120-eadi5120 [ DOI: doi:10.1126/science.adi5120 Pubmed: 38127763 ]
- Transcription initiation factor iie subunit beta (33 kDa, Protein from Homo sapiens)
- Tfiib (Complex from Homo sapiens)
- General transcription factor iih subunit 2 (44 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 5 (86 kDa, Protein from Homo sapiens)
- Non-template dna (30 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb4 (16 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- General transcription and dna repair factor iih helicase subunit xpb (89 kDa, Protein from Homo sapiens)
- Rna polymerase ii (Complex from Sus scrofa)
- General transcription factor iie subunit 1 (49 kDa, Protein from Homo sapiens)
- Template dna (30 kDa, DNA from synthetic construct)
- Rna (Complex from synthetic construct)
- Rna (1 kDa, RNA from synthetic construct)
- General transcription factor iih subunit 3 (34 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 11 (23 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Transcription initiation factor tfiid subunit 9 (29 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb11-a (13 kDa, Protein from Sus scrofa)
- Alpha-amanitin (Complex from Amanita phalloides)
- Dna-directed rna polymerase subunit (217 kDa, Protein from Sus scrofa)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Rpb12 (7 kDa, Protein from Sus scrofa)
- Transcription initiation factor tfiid subunit 7 (40 kDa, Protein from Homo sapiens)
- General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Transcription initiation factor tfiid subunit 12 (17 kDa, Protein from Homo sapiens)
- Tfiia (Complex from Homo sapiens)
- General transcription factor iih subunit 4 (52 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 4 (110 kDa, Protein from Homo sapiens)
- [[(2~{s},3~{r},4~{s},5~{r})-5-(2-azanyl-6-oxidanylidene-3~{h}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (537 Da, Ligand)
- Transcription initiation factor tfiid subunit 2 (137 kDa, Protein from Homo sapiens)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 1 (212 kDa, Protein from Homo sapiens)
- Tfiih (Complex from Homo sapiens)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Tfiif (Complex from Homo sapiens)
- Alpha-amanitin (939 Da, Protein from Amanita phalloides)
- General transcription factor iih subunit 5 (8 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 3 (103 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 10 (21 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Dna (Complex from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Structure of transcribing complex 3 (tc3), the initially transcribing complex with pol ii positioned 3nt downstream of tss (Complex)
- Magnesium ion (24 Da, Ligand)
- Transcription initiation factor tfiid subunit 13 (14 kDa, Protein from Homo sapiens)
- Cdk-activating kinase assembly factor mat1 (35 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 6 (72 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- General transcription and dna repair factor iih helicase subunit xpd (87 kDa, Protein from Homo sapiens)
- Tfiid (Complex from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- General transcription factor iih subunit 1 (62 kDa, Protein from Homo sapiens)
- Transcription initiation factor iia beta chain (41 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 8 (34 kDa, Protein from Homo sapiens)
- Tfiie (Complex from Homo sapiens)
Cardiac F-actin decorated with regulatory M-domain of cardiac myosin binding protein C
Resolution: 8.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tij
Q-score: 0.186
Risi CM, Villanueva E, Belknap B, Sadler RL, Harris SP, White HD, Galkin VE
J Mol Biol (2022) 434 pp. 167879-167879 [ Pubmed: 36370805 DOI: doi:10.1016/j.jmb.2022.167879 ]
- Myosin-binding protein c, cardiac-type (24 kDa, Protein from Homo sapiens)
- Cardiac actin (41 kDa, Protein from Sus scrofa)
- Complex of cardiac f-actin with triple helix motif of cmybp-c (Complex)
Cardiac thin filament decorated with regulatory M-domain of cardiac myosin binding protein C
Resolution: 8.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tit
Q-score: 0.217
Risi CM, Villanueva E, Belknap B, Sadler RL, Harris SP, White HD, Galkin VE
J Mol Biol (2022) 434 pp. 167879-167879 [ Pubmed: 36370805 DOI: doi:10.1016/j.jmb.2022.167879 ]
- Myosin-binding protein c, cardiac-type (24 kDa, Protein from Homo sapiens)
- Cardiac actin (41 kDa, Protein from Sus scrofa)
- Complex of cardiac thin filament with c1-m fragment of cardiac myosin binding protein c (cmybp-c) (Complex)
- Tropomyosin model (11 kDa, Protein from Sus scrofa)
Resolution: 8.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tj7
Q-score: 0.196
Risi CM, Villanueva E, Belknap B, Sadler RL, Harris SP, White HD, Galkin VE
J Mol Biol (2022) 434 pp. 167879-167879 [ Pubmed: 36370805 DOI: doi:10.1016/j.jmb.2022.167879 ]
- Myosin-binding protein c, cardiac-type (24 kDa, Protein from Homo sapiens)
- Cardiac actin (41 kDa, Protein from Sus scrofa)
- Cardiac thin filament decorated with c1 ig-domain and regulatory m-domain of cardiac myosin binding protein c (cmybp-c) (Complex)
- Tropomyosin model (11 kDa, Protein from Sus scrofa)
Cryo-EM structure of the hub of the 28 triskelia mini clathrin coat complex, class 15
Resolution: 10.5 Å
EM Method: Single-particle
Fitted PDBs: 7om8
Q-score: 0.022
Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ
EMBO J (2021) 40 pp. e108795-e108795 [ Pubmed: 34487371 DOI: doi:10.15252/embj.2021108795 ]
- Ap-2 complex subunit beta (26 kDa, Protein from Homo sapiens)
- Beta2 appendage domain of ap2 bound to terminal domains beneath the hub of the 28 triskelia mini clathrin coat complex, class 15 (Complex)
- Clathrin heavy chain (33 kDa, Protein from Sus scrofa)
- Ap-2 complex subunit beta (Complex from Homo sapiens)
- Clathrin heavy chain (Complex from Sus scrofa)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ko4
Q-score: 0.106
Risi CM, Pepper I, Belknap B, Landim-Vieira M, White HD, Dryden K, Pinto JR, Chase PB, Galkin VE
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024288118 Pubmed: 33753506 ]
- Isoform 4 of troponin t, cardiac muscle (23 kDa, Protein from Sus scrofa)
- Troponin c (18 kDa, Protein from Sus scrofa)
- Actin, alpha skeletal muscle (41 kDa, Protein from Sus scrofa)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Sus scrofa)
- Cardiac native thin filament (Complex from Sus scrofa)
- Troponin i, cardiac muscle (19 kDa, Protein from Sus scrofa)
Resolution: 8.3 Å
EM Method: Single-particle
Fitted PDBs: 7ko7
Q-score: 0.112
Risi CM, Pepper I, Belknap B, Landim-Vieira M, White HD, Dryden K, Pinto JR, Chase PB, Galkin VE
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024288118 Pubmed: 33753506 ]
- Troponin c (18 kDa, Protein from Sus scrofa)
- Actin, alpha skeletal muscle (41 kDa, Protein from Sus scrofa)
- Structure of ca2+ free / ca2+ bound cardiac native thin filament at pca=5.8 mode 1 (Complex from Sus Scofa)
- Troponin t, cardiac muscle (23 kDa, Protein from Sus scrofa)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Sus scrofa)
- Troponin i, cardiac muscle (19 kDa, Protein from Sus scrofa)
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7kon
Q-score: 0.112
Risi CM, Pepper I, Belknap B, Landim-Vieira M, White HD, Dryden K, Pinto JR, Chase PB, Galkin VE
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024288118 Pubmed: 33753506 ]
- Structure of ca2+ free / ca2+ bound cardiac native thin filament at pca=5.8 mode 2 (Complex from Sus scrofa)
- Troponin c (18 kDa, Protein from Sus scrofa)
- Actin, alpha skeletal muscle (41 kDa, Protein from Sus scrofa)
- Troponin t, cardiac muscle (23 kDa, Protein from Sus scrofa)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Sus scrofa)
- Troponin i, cardiac muscle (19 kDa, Protein from Sus scrofa)