Porcine Retinol-Binding Protein 3 (RBP3)
Kaushik V, Gessa L, Kumar N, Pinkas M, Czarnocki-Cieciura M, Palczewski K, Novacek J, Fernandes H
Open Biol (2025) 15 pp. 240180-240180 [ DOI: doi:10.1098/rsob.240180 Pubmed: 39837501 ]
- Retinol binding protein 3 (Protein from Sus scrofa)
- Retinol binding protein 3 (135 MDa, Cellular component from Sus scrofa)
Dynein motor inner dynein arm subform c (IDAc) from Porcine brain ventricles
Leung MR, Sun C, Zeng J, Anderson JR, Niu Q, Huang W, Noteborn WEM, Brown A, Zeev-Ben-Mordehai T, Zhang R
Nature (2025) 637 pp. 1170-1177 [ DOI: doi:10.1038/s41586-024-08337-5 Pubmed: 39743588 ]
Radial Spoke 3 from Pocine brain ventricles, stalk and head
Leung MR, Sun C, Zeng J, Anderson JR, Niu Q, Huang W, Noteborn WEM, Brown A, Zeev-Ben-Mordehai T, Zhang R
Nature (2025) 637 pp. 1170-1177 [ DOI: doi:10.1038/s41586-024-08337-5 Pubmed: 39743588 ]
Structure of an STK19-containing TC-NER complex
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9bz0
Q-score: 0.448
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ Pubmed: 39547228 DOI: doi:10.1016/j.cell.2024.10.020 ]
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
- Inactive serine/threonine-protein kinase 19 (28 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (142 kDa, Protein from Sus scrofa)
- Det1- and ddb1-associated protein 1 (12 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Uv-stimulated scaffold protein a (80 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*gp*a)-3') (3 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Transcription elongation factor 1 homolog (9 kDa, Protein from Homo sapiens)
- Rna polymerase rpb4/rpc9 core domain-containing protein (16 kDa, Protein from Sus scrofa)
- Dna excision repair protein ercc-6 (168 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Dna (35-mer) (27 kDa, DNA from synthetic construct)
- Dna excision repair protein ercc-8 (44 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit (218 kDa, Protein from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Dna (49-mer) (27 kDa, DNA from synthetic construct)
HURP(65-174) bound to GMPCPP-stabilized microtubule
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9duq
Q-score: 0.479
Valdez VA, Ma M, Gouveia B, Zhang R, Petry S
Nat Commun (2024) 15 pp. 9689-9689 [ DOI: doi:10.1038/s41467-024-53630-6 Pubmed: 39516491 ]
- Tubulin beta chain (47 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Hurp(65-174) bound to gmpcpp-stabilized microtubule (Complex from Sus scrofa)
- Tubulin alpha chain (48 kDa, Protein from Sus scrofa)
- Disks large-associated protein 5 (5 kDa, Protein from Homo sapiens)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8y0q
Q-score: 0.621
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Complex of fmdv o/18074 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Fmdv o/18074 (Complex from Foot-and-mouth disease virus O)
- Vp3 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus O)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus O)
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8y0r
Q-score: 0.578
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Vp3 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus A)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus A)
- Complex of fmdv a/wh/cha/09 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Fmdv a/wh/cha/09 (Complex from Foot-and-mouth disease virus A)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
Phosphoinositide phosphate 3 kinase gamma
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8so9
Q-score: 0.514
Chen CL, Syahirah R, Ravala SK, Yen YC, Klose T, Deng Q, Tesmer JJG
Nat Struct Mol Biol (2024) 31 pp. 1198-1207 [ DOI: doi:10.1038/s41594-024-01265-y Pubmed: 38565696 ]
Phosphoinositide phosphate 3 kinase gamma bound with ATP
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8soa
Q-score: 0.425
Chen CL, Syahirah R, Ravala SK, Yen YC, Klose T, Deng Q, Tesmer JJG
Nat Struct Mol Biol (2024) 31 pp. 1198-1207 [ DOI: doi:10.1038/s41594-024-01265-y Pubmed: 38565696 ]
- Pi3k-gamma-atp (210 MDa, Complex from Sus scrofa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Phosphatidylinositol-4,5-bisphosphate 3-kinase (127 kDa, Protein from Sus scrofa)
- Phosphoinositide 3-kinase regulatory subunit 5 (98 kDa, Protein from Sus scrofa)
Phosphoinositide phosphate 3 kinase gamma bound with ADP
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sob
Q-score: 0.37
Chen CL, Syahirah R, Ravala SK, Yen YC, Klose T, Deng Q, Tesmer JJG
Nat Struct Mol Biol (2024) 31 pp. 1198-1207 [ DOI: doi:10.1038/s41594-024-01265-y Pubmed: 38565696 ]
- Pi3k-gamma-adpbef3 (210 MDa, Complex from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphatidylinositol-4,5-bisphosphate 3-kinase (127 kDa, Protein from Sus scrofa)
- Phosphoinositide 3-kinase regulatory subunit 5 (98 kDa, Protein from Sus scrofa)