MATCAP bound to a human 14 protofilament microtubule
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7z6s
Q-score: 0.244
Landskron L, Bak J, Adamopoulos A, Kaplani K, Moraiti M, van den Hengel LG, Song JY, Bleijerveld OB, Nieuwenhuis J, Heidebrecht T, Henneman L, Moutin MJ, Barisic M, Taraviras S, Perrakis A, Brummelkamp TR
Science (2022) 376 pp. eabn6020-eabn6020 [ Pubmed: 35482892 DOI: doi:10.1126/science.abn6020 ]
- Tubulin alpha-1b chain (51 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta-3 chain (51 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein kiaa0895-like (53 kDa, Protein from Homo sapiens)
- Matcap bound to a human 14 protofilament microtubule (308 kDa, Complex from Homo sapiens)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7bg6
Q-score: 0.631
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Genome polyprotein (30 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (7 kDa, Protein from Human rhinovirus 14)
- Rhinovirus b14 (8 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (26 kDa, Protein from Human rhinovirus 14)
- Water (18 Da, Ligand)
- Rna-octamer (5'-r(p*up*gp*up*up*up*up*up*a)-3') (2 kDa, RNA from Rhinovirus B14)
HRV14 in complex with its receptor ICAM-1
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7bg7
Q-score: 0.696
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Intercellular adhesion molecule 1 (49 kDa, Protein from Homo sapiens)
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (7 kDa, Protein from Human rhinovirus 14)
- Intercellular adhesion molecule 1 (Complex from Homo sapiens)
- Rhinovirus (Complex from Human rhinovirus 14)
- Human rhinovirus 14 (10 MDa, Virus)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (26 kDa, Protein from Human rhinovirus 14)
- Water (18 Da, Ligand)
Rhinovirus-14 ICAM-1 activated particle at pH 6.2
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7nul
Q-score: 0.431
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- P1 (25 kDa, Protein from Human rhinovirus 14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
Rhinovirus-14 ICAM-1 empty particle at pH 6.2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7num
Q-score: 0.487
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- P1 (25 kDa, Protein from Human rhinovirus 14)
Rhinovirus 14 ICAM-1 virion-like particle at pH 6.2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7nun
Q-score: 0.472
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (7 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (26 kDa, Protein from Human rhinovirus 14)
- Octanucleotide (2 kDa, RNA from Rhinovirus B14)
Rhinovirus 14 empty particle at pH 6.2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nuo
Q-score: 0.395
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ Pubmed: 33947819 DOI: doi:10.1073/pnas.2024251118 ]
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- P1 (25 kDa, Protein from Human rhinovirus 14)
RV14 ICAM-1 pH 6.2 open particle
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Capsid protein vp2 (Protein from Rhinovirus B14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Capsid protein vp1 (Protein from Rhinovirus B14)
- Capsid protein vp3 (Protein from Rhinovirus B14)
Rhinovirus 14 virion-like at pH 6.2
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7nuq
Q-score: 0.509
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Octanucleotide (2 kDa, RNA from Rhinovirus B14)
- Rhinovirus b14 (7 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (28 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (7 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (32 kDa, Protein from Human rhinovirus 14)
- Genome polyprotein (26 kDa, Protein from Human rhinovirus 14)