CryoEM structure of wheat 40S ribosomal subunit, head domain
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ DOI: doi:10.3390/ijms242417453 Pubmed: 38139282 ]
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
3DFlex refinement of wheat 40S ribosomal subunit cryo-EM reconstruction
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
CryoEM structure of wheat 40S ribosomal subunit, body domain
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8r6f
Q-score: 0.6
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s8 (25 kDa, Protein from Triticum aestivum)
- Large ribosomal subunit protein el41z/el41y/el41x/el41w/el41v (3 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s6 (28 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s4 (30 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us2 (33 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s24 (15 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us17 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Rna (1177-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s23 (15 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us15 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- S5 drbm domain-containing protein (30 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s11, chloroplastic (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s26 (15 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (8 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us8c (14 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s4, chloroplastic (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s27 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s7 (22 kDa, Protein from Triticum aestivum)
Subtomogram average of 80S ribosome from HeLa cell lysate
Baymukhametov TN, Lyabin DN, Chesnokov YM, Sorokin II, Pechnikova EV, Vasiliev AL, Afonina ZA
Nucleic Acids Res (2023) 51 pp. 908-918 [ DOI: doi:10.1093/nar/gkac1208 Pubmed: 36583341 ]
Translating 80S ribosome from HeLa cell lysate
Baymukhametov TN, Lyabin DN, Chesnokov YM, Sorokin II, Pechnikova EV, Vasiliev AL, Afonina ZA
Nucleic Acids Res (2023) 51 pp. 908-918 [ Pubmed: 36583341 DOI: doi:10.1093/nar/gkac1208 ]
E.coli pre-30S delta rbfA ribosome subnit class E
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ DOI: doi:10.3390/ijms22116140 Pubmed: 34200244 ]
E. coli pre-30S delta rbfA ribosomal subunit class A
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ DOI: doi:10.3390/ijms22116140 Pubmed: 34200244 ]
E. coli pre-30S delta rbfA ribosomal subunit class F
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 7oe0
Q-score: 0.389
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ DOI: doi:10.3390/ijms22116140 Pubmed: 34200244 ]
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- E. coli pre-30s delta rbfa ribosomal subunit class f (Complex from Escherichia coli BW25113)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli BW25113)
- 16s rrna (499 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s7 (19 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli BW25113)
30S ribosomal subunit from E. coli
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7oe1
Q-score: 0.373
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ DOI: doi:10.3390/ijms22116140 Pubmed: 34200244 ]
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s7 (19 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 16s rrna (499 kDa, RNA from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal subunit from e.coli (850 kDa, Complex from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
E.coli delta rbfA pre-30S ribosomal subunit class D
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7oi0
Q-score: 0.481
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ DOI: doi:10.3390/ijms22116140 Pubmed: 34200244 ]
- E. coli pre-30s delta rbfa ribosomal subunit (850 kDa, Complex from Escherichia coli BW25113)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli BW25113)
- 16s rrna (499 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli BW25113)