CryoEM structure of wheat 40S ribosomal subunit, head domain
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
CryoEM structure of wheat 40S ribosomal subunit, body domain
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8r6f
Q-score: 0.6
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s6 (28 kDa, Protein from Triticum aestivum)
- S5 drbm domain-containing protein (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s7 (22 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s4, chloroplastic (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s26 (15 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (8 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us15 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s8 (25 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s27 (9 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- 40s ribosomal protein s23 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s4 (30 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- 30s ribosomal protein s11, chloroplastic (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s24 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s30 (6 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us8c (14 kDa, Protein from Triticum aestivum)
- Rna (1177-mer) (584 kDa, RNA from Triticum aestivum)
- Large ribosomal subunit protein el41z/el41y/el41x/el41w/el41v (3 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us17 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us2 (33 kDa, Protein from Triticum aestivum)
E. coli pre-30S delta rbfA ribosomal subunit class F
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 7oe0
Q-score: 0.389
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ Pubmed: 34200244 DOI: doi:10.3390/ijms22116140 ]
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s7 (19 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli BW25113)
- 16s rrna (499 kDa, RNA from Escherichia coli BW25113)
- E. coli pre-30s delta rbfa ribosomal subunit class f (Complex from Escherichia coli BW25113)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli BW25113)
30S ribosomal subunit from E. coli
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7oe1
Q-score: 0.373
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ Pubmed: 34200244 DOI: doi:10.3390/ijms22116140 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (19 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal subunit from e.coli (850 kDa, Complex from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 16s rrna (499 kDa, RNA from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli str. K-12 substr. MG1655)
E.coli delta rbfA pre-30S ribosomal subunit class D
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7oi0
Q-score: 0.481
Maksimova EM, Korepanov AP, Kravchenko OV, Baymukhametov TN, Myasnikov AG, Vassilenko KS, Afonina ZA, Stolboushkina EA
Int J Mol Sci (2021) 22 [ Pubmed: 34200244 DOI: doi:10.3390/ijms22116140 ]
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- Water (18 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli BW25113)
- 16s rrna (499 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- E. coli pre-30s delta rbfa ribosomal subunit (850 kDa, Complex from Escherichia coli BW25113)