Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8xau
Q-score: 0.477
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ DOI: doi:10.1038/s41422-024-00981-w Pubmed: 38834762 ]
- Hera (Complex from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
Cryo-EM structure of an anti-phage defense complex
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8xav
Q-score: 0.535
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ DOI: doi:10.1038/s41422-024-00981-w Pubmed: 38834762 ]
- Duf4297-hera (Complex from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8xaw
Q-score: 0.553
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ DOI: doi:10.1038/s41422-024-00981-w Pubmed: 38834762 ]
- Duf4297-hera-dna-state2 (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Duf4297 (46 kDa, Protein from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- S20dna2 (18 kDa, DNA from Escherichia coli)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- S20dna1 (18 kDa, DNA from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8xax
Q-score: 0.516
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ DOI: doi:10.1038/s41422-024-00981-w Pubmed: 38834762 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- S20dna2 (18 kDa, DNA from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297-hera-dna state1 (Complex from Escherichia coli)
- S20dna1 (18 kDa, DNA from Escherichia coli)
Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8xay
Q-score: 0.55
An Q, Wang Y, Tian Z, Han J, Li J, Liao F, Yu F, Zhao H, Wen Y, Zhang H, Deng Z
Cell Res (2024) 34 pp. 545-555 [ DOI: doi:10.1038/s41422-024-00981-w Pubmed: 38834762 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- S20dna3 (18 kDa, Macromolecule from Escherichia coli)
- Duf4297 (46 kDa, Protein from Escherichia coli)
- S20dna4 (18 kDa, DNA from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Atp-binding protein (64 kDa, Protein from Escherichia coli)
- Duf4297-hera (Complex from Escherichia coli)
Cryo-EM structure of viral topoisomerase in conformation 1
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8j9y
Q-score: 0.523
Zhao Y, Kuang W, An Q, Li J, Wang Y, Deng Z
Mbio (2023) 14 pp. e0122823-e0122823 [ DOI: doi:10.1128/mbio.01228-23 Pubmed: 37610250 ]
- P1192r (135 MDa, Complex from African swine fever virus LIS57)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus LIS57)
Cryo-EM structure of viral topoisomerase in conformation 2
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8j9z
Q-score: 0.529
Zhao Y, Kuang W, An Q, Li J, Wang Y, Deng Z
Mbio (2023) 14 pp. e0122823-e0122823 [ DOI: doi:10.1128/mbio.01228-23 Pubmed: 37610250 ]
- P1192r (135 MDa, Complex from African swine fever virus LIS57)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus LIS57)
Structure of the SbCas7-11-crRNA-NTR complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gna
Q-score: 0.544
Wang X, Yu G, Wen Y, An Q, Li X, Liao F, Lian C, Zhang K, Yin H, Wei Y, Deng Z, Zhang H
Nucleic Acids Res (2022) 50 pp. 12913-12923 [ DOI: doi:10.1093/nar/gkac1151 Pubmed: 36484100 ]
- Rna (32-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Ternary complex (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
Structure of the SbCas7-11-crRNA-NTR-Csx29 complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gu6
Q-score: 0.496
Wang X, Yu G, Wen Y, An Q, Li X, Liao F, Lian C, Zhang K, Yin H, Wei Y, Deng Z, Zhang H
Nucleic Acids Res (2022) 50 pp. 12913-12923 [ DOI: doi:10.1093/nar/gkac1151 Pubmed: 36484100 ]
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (5 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Ternary complex (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7x7a
Q-score: 0.523
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Binary complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)