Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8wxl
Q-score: 0.53
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
Structure of the SARS-CoV-2 BA.2.86 spike protein (1-up state)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8xux
Q-score: 0.46
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up state)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8xuy
Q-score: 0.369
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.2.86 spike glycoprotein with ace2 (600 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8xuz
Q-score: 0.435
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 xbb1.5 spike glycoprotein with ace2 (420 kDa, Complex from Homo sapiens)
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xv0
Q-score: 0.508
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 xbb1.5 spike glycoprotein with ace2 (420 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (down state)
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8xv1
Q-score: 0.515
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 xbb1.5 spike glycoprotein with ace2 (420 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (3-up state)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8xvm
Q-score: 0.31
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ Pubmed: 39375326 DOI: doi:10.1038/s41467-024-52808-2 ]
Structure of SARS-CoV-2 JN.1 spike RBD in complex with ACE2 (up state)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9iu1
Q-score: 0.332
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 xbb1.5 spike glycoprotein with ace2 (420 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with ACE2 (2-up state)
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ Pubmed: 39375326 DOI: doi:10.1038/s41467-024-52808-2 ]
Yajima H, Anraku Y, Kaku Y, Kimura KT, Plianchaisuk A, Okumura K, Nakada-Nakura Y, Atarashi Y, Hemmi T, Kuroda D, Takahashi Y, Kita S, Sasaki J, Sumita H, Ito J, Maenaka K, Sato K, Hashiguchi T
Nat Commun (2024) 15 pp. 8574-8574 [ DOI: doi:10.1038/s41467-024-52808-2 Pubmed: 39375326 ]