Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472
de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M
J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Rna (2 kDa, RNA from Pseudomonas phage phiKZ)
- Dna (3 kDa, DNA from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Zinc ion (65 Da, Ligand)
- Phikz non-virion rna polymerase transcribing promoter p119l (400 kDa, Complex from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex from Pseudomonas virus phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Unk helices (2 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas phage PA7)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Zinc ion (65 Da, Ligand)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas virus phiKZ)
Bacteriophage PhiKZ non-virion RNA Polymerase
de Martin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) [ Pubmed: 34181731 DOI: 10.1093/nar/gkab539 ]
Image sets:
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 [ Pubmed: 33307091 DOI: 10.1016/j.jmb.2020.166743 ]
Image sets:
Bacteriophage PhiKZ non-virion RNA Polymerase
de Martin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) [ Pubmed: 34181731 DOI: 10.1093/nar/gkab539 ]
Image sets:
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 [ Pubmed: 33307091 DOI: 10.1016/j.jmb.2020.166743 ]
Image sets:
de Martín Garrido N, Crone MA, Ramlaul K, Simpson PA, Freemont PS, Aylett CHS
Mol Microbiol (2019) 113 pp. 143-152 [ Pubmed: 31618483 DOI: 10.1111/mmi.14406 ]
Image sets:
Pincer of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]
- Tuberin (Protein from Homo sapiens)
- Pincer of the human tsc protein complex (700 MDa, Complex from Homo sapiens)
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
Barbed tail of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Tuberin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Barbed tail of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Hamartin (Protein from Homo sapiens)