Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472
de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M
J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Rna (2 kDa, RNA from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz non-virion rna polymerase transcribing promoter p119l (400 kDa, Complex from Pseudomonas phage phiKZ)
- Dna (3 kDa, DNA from Pseudomonas phage phiKZ)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex from Pseudomonas virus phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas phage PA7)
- Zinc ion (65 Da, Ligand)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Unk helices (2 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas virus phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 [ Pubmed: 33307091 DOI: 10.1016/j.jmb.2020.166743 ]
Image sets:
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 [ Pubmed: 33307091 DOI: 10.1016/j.jmb.2020.166743 ]
Image sets:
de Martín Garrido N, Crone MA, Ramlaul K, Simpson PA, Freemont PS, Aylett CHS
Mol Microbiol (2019) 113 pp. 143-152 [ DOI: 10.1111/mmi.14406 Pubmed: 31618483 ]
Image sets:
Pincer of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
- Pincer of the human tsc protein complex (700 MDa, Complex from Homo sapiens)
Barbed tail of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Barbed tail of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
Structure of the body of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Body of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6rrs
Q-score: 0.421
de Martin Garrido N, Crone MA, Ramlaul K, Simpson PA, Freemont PS, Aylett CHS
Mol Microbiol (2020) 113 pp. 143-152 [ DOI: doi:10.1111/mmi.14406 Pubmed: 31618483 ]
- Escherichia virus ms2 (Virus from Escherichia virus MS2)
- Capsid protein (13 kDa, Protein from Escherichia phage MS2)