Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472
de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M
J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]
- Phikz non-virion rna polymerase transcribing promoter p119l (400 kDa, Complex from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Rna (2 kDa, RNA from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (3 kDa, DNA from Pseudomonas phage phiKZ)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex from Pseudomonas virus phiKZ)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas virus phiKZ)
- Unk helices (2 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas phage PA7)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
Pincer of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]
- Pincer of the human tsc protein complex (700 MDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
Barbed tail of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]
- Tbc1d7 (Protein from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
- Hamartin (Protein from Homo sapiens)
- Barbed tail of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
Structure of the body of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]
- Body of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6rrs
Q-score: 0.421
de Martin Garrido N, Crone MA, Ramlaul K, Simpson PA, Freemont PS, Aylett CHS
Mol Microbiol (2020) 113 pp. 143-152 [ DOI: doi:10.1111/mmi.14406 Pubmed: 31618483 ]
- Capsid protein (13 kDa, Protein from Escherichia phage MS2)
- Escherichia virus ms2 (Virus from Escherichia virus MS2)
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 6rrt
Q-score: 0.256
de Martin Garrido N, Crone MA, Ramlaul K, Simpson PA, Freemont PS, Aylett CHS
Mol Microbiol (2020) 113 pp. 143-152 [ DOI: doi:10.1111/mmi.14406 Pubmed: 31618483 ]
- Capsid protein (13 kDa, Protein from Escherichia phage MS2)
- Escherichia virus ms2 (Virus from Escherichia virus MS2)
Architecture of the human mTORC2 core complex (C2)
Stuttfeld E, Aylett CHS, Imseng S, Boehringer D, Scaiola A, Sauer E, Hall MN, Maier T, Ban N
eLife (2018) 7 [ Pubmed: 29424687 DOI: doi:10.7554/eLife.33101 ]
- Human mtorc2 core complex (c2) (1 MDa, Complex from Homo sapiens)
Human mTORC2 core complex accessory factors
Stuttfeld E, Aylett CHS, Imseng S, Boehringer D, Scaiola A, Sauer E, Hall MN, Maier T, Ban N
eLife (2018) 7 [ Pubmed: 29424687 DOI: doi:10.7554/eLife.33101 ]
- Human mtorc2 core complex accessory factors (250 kDa, Complex from Homo sapiens)