Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472
de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M
J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Rna (2 kDa, RNA from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz non-virion rna polymerase transcribing promoter p119l (400 kDa, Complex from Pseudomonas phage phiKZ)
- Dna (3 kDa, DNA from Pseudomonas phage phiKZ)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex from Pseudomonas virus phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas phage PA7)
- Zinc ion (65 Da, Ligand)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Unk helices (2 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas virus phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Pincer of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
- Pincer of the human tsc protein complex (700 MDa, Complex from Homo sapiens)
Barbed tail of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Barbed tail of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
Structure of the body of the human TSC protein complex
Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G
J Mol Biol (2020) 433 pp. 166743-166743 [ DOI: doi:10.1016/j.jmb.2020.166743 Pubmed: 33307091 ]
- Hamartin (Protein from Homo sapiens)
- Tbc1d7 (Protein from Homo sapiens)
- Body of the human tsc protein complex (700 kDa, Complex from Homo sapiens)
- Tuberin (Protein from Homo sapiens)
Human 40S-eIF2D-re-initiation complex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5oa3
Q-score: 0.265
Weisser M, Schafer T, Leibundgut M, Bohringer D, Aylett CHS, Ban N
Mol Cell (2017) 67 pp. 447-456.e7 [ Pubmed: 28732596 DOI: doi:10.1016/j.molcel.2017.06.032 ]
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Ires mrna (88 kDa, RNA from Hepatitis C virus)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- Hcv ires mrna (Complex from Hepatitis C virus)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit (Complex from Homo sapiens)
- Human translation re-initiation complex of eifd, initiator trna and the small ribosomal subunit (1 MDa, Complex)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- Ribosomal protein el41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Initiator met-trna-i (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Eif2d (Complex from Homo sapiens)
- Ribosomal protein s27a (8 kDa, Protein from Homo sapiens)
- Initiator met-trna-i (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
Architecture of human mTOR Complex 1 - 6.1 Angstrom reconstruction
Aylett CHS, Sauer E, Imseng S, Boehringer D, Hall MN, Ban N, Maier T
Science (2016) 351 pp. 48-52 [ DOI: doi:10.1126/science.aaa3870 Pubmed: 26678875 ]
- Raptor (150 kDa, Protein from Homo sapiens)
- Human mtor complex 1 (1 MDa, Sample)
- Mlst8 (40 kDa, Protein from Homo sapiens)
- Mtor (290 kDa, Protein from Homo sapiens)
Architecture of human mTOR Complex 1 - 5.9 Angstrom reconstruction
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 5flc
Q-score: 0.17
Aylett CHS, Sauer E, Imseng S, Boehringer D, Hall MN, Ban N, Maier T
Science (2016) 351 pp. 48-52 [ DOI: doi:10.1126/SCIENCE.AAA3870 Pubmed: 26678875 ]
- Raptor (150 kDa, Protein from Homo sapiens)
- Human mtor complex 1 (1 MDa, Sample)
- Mlst8 (40 kDa, Protein from Homo sapiens)
- Mtor (290 kDa, Protein from Homo sapiens)