Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472
de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M
J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Rna (2 kDa, RNA from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Dna (23 kDa, DNA from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz non-virion rna polymerase transcribing promoter p119l (400 kDa, Complex from Pseudomonas phage phiKZ)
- Dna (3 kDa, DNA from Pseudomonas phage phiKZ)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex from Pseudomonas virus phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527
deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M
Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas phage PA7)
- Zinc ion (65 Da, Ligand)
- Bacteriophage phikz non-virion rna polymerase (300 kDa, Complex)
- Dna-directed rna polymerase (78 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz055 (57 kDa, Protein from Pseudomonas phage phiKZ)
- Unk helices (2 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz068 (59 kDa, Protein from Pseudomonas phage phiKZ)
- Bacteriophage phikz non-virion rna polymerase (Complex from Pseudomonas virus phiKZ)
- Phikz074 (77 kDa, Protein from Pseudomonas phage phiKZ)
- Phikz123 (62 kDa, Protein from Pseudomonas phage phiKZ)
Human 40S-eIF2D-re-initiation complex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5oa3
Q-score: 0.265
Weisser M, Schafer T, Leibundgut M, Bohringer D, Aylett CHS, Ban N
Mol Cell (2017) 67 pp. 447-456.e7 [ Pubmed: 28732596 DOI: doi:10.1016/j.molcel.2017.06.032 ]
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- Ires mrna (88 kDa, RNA from Hepatitis C virus)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- Hcv ires mrna (Complex from Hepatitis C virus)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit (Complex from Homo sapiens)
- Human translation re-initiation complex of eifd, initiator trna and the small ribosomal subunit (1 MDa, Complex)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2d (64 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- Ribosomal protein el41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Initiator met-trna-i (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Eif2d (Complex from Homo sapiens)
- Ribosomal protein s27a (8 kDa, Protein from Homo sapiens)
- Initiator met-trna-i (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)