Cryo-EM of human CAK: Microscope comparisons
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
- Microscope comparison Glacios vs. Krios: Krios (grid VC5-1)
- Microscope comparison with and without energy filter: Krios, slit retracted (grid VC12-3)
- Microscope comparison with and without energy filter: Krios, slit inserted (grid VC12-3)
- Microscope comparison Glacios vs. Krios: Glacios (grid VC5-1)
Cryo-EM structure of the CAK-THZ1 complex
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
Cryo-EM structure of the CAK-CT7030 complex
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
Cryo-EM of the human CAK: Data for 1.73 Å-resolution reconstruction
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
- EER movies, CAK-ICEC0943, grid VC1-1
- EER movies, CAK-BS181, grid VC8-1
- EER movies, CAK-ICEC0942, grid VC13-1
- EER movies, CAK-dinaciclib, grid VC4-3
- EER movies, CAK-ICEC0768, grid VC2-4
- EER movies, CAK-ICEC0942, grid VC14-1
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 [ Pubmed: 38480681 DOI: 10.1038/s41467-024-46375-9 ]
Image sets:
Cryo-EM structure of CAK in complex with inhibitor BS-181
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 8p6w
Q-score: 0.727
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 pp. 2265-2265 [ Pubmed: 38480681 DOI: doi:10.1038/s41467-024-46375-9 ]
- Cdk-activating kinase assembly factor mat1 (10 kDa, Protein from Homo sapiens)
- Cdk-activating kinase (85 kDa, Complex from Homo sapiens)
- Cyclin-dependent kinase 7 (39 kDa, Protein from Homo sapiens)
- ~{n}5-(6-azanylhexyl)-~{n}7-(phenylmethyl)-3-propan-2-yl-pyrazolo[1,5-a]pyrimidine-5,7-diamine (380 Da, Ligand)
- Cyclin-h (37 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Cryo-EM structure of CAK in complex with inhibitor BS-194
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 8p6x
Q-score: 0.695
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 pp. 2265-2265 [ Pubmed: 38480681 DOI: doi:10.1038/s41467-024-46375-9 ]
- Cdk-activating kinase assembly factor mat1 (10 kDa, Protein from Homo sapiens)
- Cdk-activating kinase (85 kDa, Complex from Homo sapiens)
- Cyclin-dependent kinase 7 (39 kDa, Protein from Homo sapiens)
- (2s,3s)-3-{[7-(benzylamino)-3-(1-methylethyl)pyrazolo[1,5-a]pyrimidin-5-yl]amino}butane-1,2,4-triol (385 Da, Ligand)
- Cyclin-h (37 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-R
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8p6z
Q-score: 0.687
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 pp. 2265-2265 [ Pubmed: 38480681 DOI: doi:10.1038/s41467-024-46375-9 ]
- Cdk-activating kinase assembly factor mat1 (10 kDa, Protein from Homo sapiens)
- N7-(phenylmethyl)-3-propan-2-yl-n5-[(3r)-pyrrolidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine (350 Da, Ligand)
- Cdk-activating kinase (85 kDa, Complex from Homo sapiens)
- Cyclin-dependent kinase 7 (39 kDa, Protein from Homo sapiens)
- Cyclin-h (37 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-S
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8p70
Q-score: 0.68
Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ
Nat Commun (2024) 15 pp. 2265-2265 [ Pubmed: 38480681 DOI: doi:10.1038/s41467-024-46375-9 ]
- N7-(phenylmethyl)-3-propan-2-yl-n5-[(3s)-pyrrolidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine (350 Da, Ligand)
- Cdk-activating kinase assembly factor mat1 (10 kDa, Protein from Homo sapiens)
- Cdk-activating kinase (85 kDa, Complex from Homo sapiens)
- Cyclin-dependent kinase 7 (39 kDa, Protein from Homo sapiens)
- Cyclin-h (37 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)