Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8sq9
Q-score: 0.528
Small GI, Fedorova O, Olinares PDB, Chandanani J, Banerjee A, Choi YJ, Molina H, Chait BT, Darst SA, Campbell EA
Mol Cell (2023) 83 pp. 3921-3930.e7 [ DOI: doi:10.1016/j.molcel.2023.10.001 Pubmed: 37890482 ]
- Zinc ion (65 Da, Ligand)
- Template rna (17 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Primer rna (11 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- 5'-o-[(s)-hydroxy{[(s)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine (482 Da, Ligand)
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rna-directed rna polymerase (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 replication-transcription complex bound to nsp9 and umpcpp, as a pre-catalytic nmpylation intermediate (Complex from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8sqj
Q-score: 0.511
Small GI, Fedorova O, Olinares PDB, Chandanani J, Banerjee A, Choi YJ, Molina H, Chait BT, Darst SA, Campbell EA
Mol Cell (2023) 83 pp. 3921-3930.e7 [ DOI: doi:10.1016/j.molcel.2023.10.001 Pubmed: 37890482 ]
- Zinc ion (65 Da, Ligand)
- Template rna (17 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- Magnesium ion (24 Da, Ligand)
- Sars-cov-2 replication-transcription complex bound to rna-nsp9, as a noncatalytic rna-nsp9 binding mode (Complex from Severe acute respiratory syndrome coronavirus 2)
- Water (18 Da, Ligand)
- Primer rna (11 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 5' utr (6 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rna-directed rna polymerase (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 5'-o-[(r)-hydroxy(thiophosphonooxy)phosphoryl]guanosine (459 Da, Ligand)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8sqk
Q-score: 0.533
Small GI, Fedorova O, Olinares PDB, Chandanani J, Banerjee A, Choi YJ, Molina H, Chait BT, Darst SA, Campbell EA
Mol Cell (2023) 83 pp. 3921-3930.e7 [ DOI: doi:10.1016/j.molcel.2023.10.001 Pubmed: 37890482 ]
- Zinc ion (65 Da, Ligand)
- Sars-cov-2 replication-transcription complex bound to rna-nsp9 and gdp-betas, as a pre-catalytic dernaylation/mrna capping intermediate (Complex from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Rna-directed rna polymerase nsp12 (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Primer rna (10 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Template rna (11 kDa, RNA from Severe acute respiratory syndrome coronavirus)
- Sars-cov-2 5' utr (6 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 5'-o-[(r)-hydroxy(thiophosphonooxy)phosphoryl]guanosine (459 Da, Ligand)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Prefusion-stabilized SARS-CoV-2 spike protein
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8fez
Q-score: 0.312
Gonzalez KJ, Huang J, Criado MF, Banerjee A, Tompkins SM, Mousa JJ, Strauch EM
Nat Commun (2024) 15 pp. 1335-1335 [ Pubmed: 38351001 DOI: doi:10.1038/s41467-024-45480-z ]
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8di5
Q-score: 0.51
Chen C, Saville JW, Marti MM, Schafer A, Cheng MH, Mannar D, Zhu X, Berezuk AM, Banerjee A, Sobolewski MD, Kim A, Treat BR, Da Silva Castanha PM, Enick N, McCormick KD, Liu X, Adams C, Hines MG, Sun Z, Chen W, Jacobs JL, Barratt-Boyes SM, Mellors JW, Baric RS, Bahar I, Dimitrov DS, Subramaniam S, Martinez DR, Li W
iScience (2022) 25 pp. 104798-104798 [ DOI: doi:10.1016/j.isci.2022.104798 Pubmed: 35875685 ]
- Vh f6 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Vh f6 (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 beta (b.1.351) spike protein in complex with vh domain f6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 beta (b.1.351) spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
Structure of human ATG9A, the only transmembrane protein of the core autophagy machinery
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6wqz
Q-score: 0.5
Guardia CM, Tan XF, Lian T, Rana MS, Zhou W, Christenson ET, Lowry AJ, Faraldo-Gomez JD, Bonifacino JS, Jiang J, Banerjee A
Cell Rep (2020) 31 pp. 107837-107837 [ Pubmed: 32610138 DOI: doi:10.1016/j.celrep.2020.107837 ]
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Autophagy related 9a with lmng (Complex from Homo sapiens)
- Autophagy-related protein 9a (81 kDa, Protein from Homo sapiens)
Structure of human ATG9A, the only transmembrane protein of the core autophagy machinery
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6wr4
Q-score: 0.526
Guardia CM, Tan XF, Lian T, Rana MS, Zhou W, Christenson ET, Lowry AJ, Faraldo-Gomez JD, Bonifacino JS, Jiang J, Banerjee A
Cell Rep (2020) 31 pp. 107837-107837 [ DOI: doi:10.1016/j.celrep.2020.107837 Pubmed: 32610138 ]
- Autophagy-related protein 9a (94 kDa, Protein from Homo sapiens)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Autophagy related 9a with lmng (Complex from Homo sapiens)