Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 8.0
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8qqz
Q-score: 0.68
Podoliak E, Lamm GHU, Marin E, Schellbach AV, Fedotov DA, Stetsenko A, Asido M, Maliar N, Bourenkov G, Balandin T, Baeken C, Astashkin R, Schneider TR, Bateman A, Wachtveitl J, Schapiro I, Busskamp V, Guskov A, Gordeliy V, Alekseev A, Kovalev K
Nat Commun (2024) 15 pp. 3119-3119 [ Pubmed: 38600129 DOI: doi:10.1038/s41467-024-47469-0 ]
- Light-driven sodium pump ernar (36 kDa, Complex from Erythrobacter)
- Bacteriorhodopsin-like protein (32 kDa, Protein from Erythrobacter)
- Water (18 Da, Ligand)
- Eicosane (282 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 4.3
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8qr0
Q-score: 0.687
Podoliak E, Lamm GHU, Marin E, Schellbach AV, Fedotov DA, Stetsenko A, Asido M, Maliar N, Bourenkov G, Balandin T, Baeken C, Astashkin R, Schneider TR, Bateman A, Wachtveitl J, Schapiro I, Busskamp V, Guskov A, Gordeliy V, Alekseev A, Kovalev K
Nat Commun (2024) 15 pp. 3119-3119 [ DOI: doi:10.1038/s41467-024-47469-0 Pubmed: 38600129 ]
- Light-driven sodium pump ernar (36 kDa, Complex from Erythrobacter)
- Bacteriorhodopsin-like protein (32 kDa, Protein from Erythrobacter)
- Water (18 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Eicosane (282 Da, Ligand)
Cryo-EM structures of human RNA Polymerase III
Girbig M, Misiaszek AD, Vorländer MK, Lafita A, Grötsch H, Baudin F, Bateman A, Müller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ Pubmed: 33558764 DOI: 10.1038/s41594-020-00555-5 ]
Image sets:
- Initially picked particles of human RNA Pol III apo
- Polished particles of human RNA Pol III EC (final reconstruction)
- LZW-TIFF compressed multiframe micrographs of human RNA Pol III apo
- LZW-TIFF compressed multiframe micrographs of human RNA Pol III EC
- Initially picked particles of human RNA Pol III EC
- Polished particles of human RNA Pol III apo (final reconstruction)
Cryo-EM structure of human apo RNA Polymerase III
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7a6h
Q-score: 0.425
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Cryo-em structure of human apo rna polymerase iii (776 kDa, Complex from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
Cryo-EM structure of human RNA Polymerase III elongation complex 1
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ae1
Q-score: 0.48
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Human rna polymerase (Complex from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Template-dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Rna, dna (Complex from synthetic construct)
- Non-template dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Rna (6 kDa, RNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Human rna polymerase iii elongation complex 1 (776 kDa, Complex)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
Human RNA Polymerase III Elongation Complex, Map C
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Human rna polymerase iii elongation complex (776 MDa, Complex from Homo sapiens)
Cryo-EM structure of human RNA Polymerase III elongation complex 3
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ae3
Q-score: 0.373
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Dna-directed rna polymerase iii subunit rpc7 (25 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc5 (80 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc9 (16 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc2 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc4 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc6 (35 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Human rna polymerase iii elongation complex 3 (776 kDa, Complex)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Human rna polymerase iii elongation complex (Complex from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc3 (60 kDa, Protein from Homo sapiens)
- Rna, dna (Complex from synthetic construct)
- Non-template dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase iii subunit rpc8 (22 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase iii subunit rpc1 (155 kDa, Protein from Homo sapiens)
- Rna (6 kDa, RNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Template dna (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of human RNA Polymerase III Elongation Complex, Map E
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Human rna polymerase iii elongation complex (776 MDa, Complex from Homo sapiens)
Cryo-EM structure of human RNA Polymerase III Elongation Complex, map F
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Human rna polymerase iii elongation complex (776 MDa, Complex from Homo sapiens)
Cryo-EM structure of human RNA Polymerase III, map G
Girbig M, Misiaszek AD, Vorlander MK, Lafita A, Grotsch H, Baudin F, Bateman A, Muller CW
Nat Struct Mol Biol (2021) 28 pp. 210-219 [ DOI: doi:10.1038/s41594-020-00555-5 Pubmed: 33558764 ]
- Human rna polymerase iii (776 MDa, Complex from Homo sapiens)