Electron Microscopy Data Bank

EMPIAR-10638

Release date: May 7, 2021
Dataset size: 24.4 TB
Experiment type: EMDB

Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D

J Virol (2021) 95 [ Pubmed: 33853966 DOI: 10.1128/jvi.00282-21 ]

Image sets:

Unaligned movies of calicivirus 2117 VLPs

EMD-12194

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The cryo-EM structure of vesivirus 2117, an adventitious agent and possible cause of haemorrhagic gastroenteritis in dogs.

Release date: April 14, 2021
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 7bjp
Q-score: 0.435

Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D

J Virol (2021) 95 pp. e0028221-e0028221 [ DOI: doi:10.1128/JVI.00282-21 Pubmed: 33853966 ]

Sample:

Calicivirus isolate 2117 (Virus from Calicivirus isolate 2117)
Capsid protein (58 kDa, Protein from Calicivirus isolate 2117)

EMPIAR-10192

Release date: Jan. 18, 2019
Dataset size: 324.9 GB
Experiment type: EMDB

Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D

Nature (2019) [ DOI: 10.1038/s41586-018-0852-1 Pubmed: 30626974 ]

Image sets:

Motion corrected micrographs of feline calicivirus strain F9

EMPIAR-10193

Release date: Jan. 18, 2019
Dataset size: 867.0 GB
Experiment type: EMDB

Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D

Nature (2019) [ DOI: 10.1038/s41586-018-0852-1 Pubmed: 30626974 ]

Image sets:

Motion corrected micrographs of feline calicivirus strain F9 decorated with feline junctional adhesion molecule A

EMD-0054

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Feline Calicivirus Strain F9

Release date: Jan. 16, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6gsh

Conley MJ, McElwee M, Azmi L, Gabrielsen M, Byron O, Goodfellow IG, Bhella D

Nature (2019) 565 pp. 377-381 [ Pubmed: 30626974 DOI: doi:10.1038/s41586-018-0852-1 ]

Sample:

Vp1 (73 kDa, Protein from Feline calicivirus)
T=3 icosahedral capsid. (Complex from Feline calicivirus)
Potassium ion (39 Da, Ligand)

EMD-0056

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Feline Calicivirus Strain F9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule A - leading to assembly of a portal structure at a unique three-fold axis.

Release date: Jan. 16, 2019
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 6gsi
Q-score: 0.439

Conley MJ, McElwee M, Azmi L, Gabrielsen M, Byron O, Goodfellow IG, Bhella D

Nature (2019) 565 pp. 377-381 [ Pubmed: 30626974 DOI: doi:10.1038/s41586-018-0852-1 ]

Sample:

Vp2 - portal. (Complex from Feline calicivirus strain F9)
Junctional adhesion molecule a (22 kDa, Protein from Felis catus)
Vp2 (12 kDa, Protein from Feline calicivirus strain F9)
Potassium ion (39 Da, Ligand)
Feline calicivirus strain f9 (Virus from Feline calicivirus strain F9)
Feline junctional adhesion molecule a (Complex from Felis catus)
Capsid protein (73 kDa, Protein from Feline calicivirus strain F9)
Feline calicivirus strain f9 (Virus)

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EMD-1942

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Feline Calicivirus strain F9

Release date: Aug. 22, 2012
Resolution: 8.9 Å
EM Method: Single-particle

Bhella D, Goodfellow IG

J Virol (2011) 85 pp. 11381-11390 [ DOI: doi:10.1128/JVI.05621-11 Pubmed: 21865392 ]

Sample:

Feline calicivirus (10 MDa, Sample)
Feline calicivirus (10 MDa, Virus from Feline calicivirus)

EMD-1943

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Feline Calicivirus strain F9 decorated with Junctional Adhesion Molecule A

Release date: Aug. 22, 2012
Resolution: 11.8 Å
EM Method: Single-particle

Bhella D, Goodfellow IG

J Virol (2011) 85 pp. 11381-11390 [ DOI: doi:10.1128/JVI.05621-11 Pubmed: 21865392 ]

Sample:

Junctional adhesion molecule a (29 kDa, Protein from Felis catus)
Feline calicivirus decorated with junctional adhesion molecule a (16 MDa, Sample)
Feline calicivirus (10 MDa, Virus from Feline calicivirus)

EMD-1944

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Feline Calicivirus strain F9 decorated with Junctional Adhesion Molecule A

Release date: Aug. 22, 2012
Resolution: 10.3 Å
EM Method: Single-particle

Bhella D, Goodfellow IG

J Virol (2011) 85 pp. 11381-11390 [ DOI: doi:10.1128/JVI.05621-11 Pubmed: 21865392 ]

Sample:

Junctional adhesion molecule a (29 kDa, Protein from Felis catus)
Feline calicivirus decorated with junctional adhesion molecule a (16 MDa, Sample)
Feline calicivirus (10 MDa, Virus from Feline calicivirus)

EMD-1945

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Feline Calicivirus strain F9 decorated with Junctional Adhesion Molecule A

Release date: Aug. 22, 2012
Resolution: 10.2 Å
EM Method: Single-particle

Bhella D, Goodfellow IG

J Virol (2011) 85 pp. 11381-11390 [ DOI: doi:10.1128/JVI.05621-11 Pubmed: 21865392 ]

Sample:

Junctional adhesion molecule a (29 kDa, Protein from Felis catus)
Feline calicivirus decorated with junctional adhesion molecule a (16 MDa, Sample)
Feline calicivirus (10 MDa, Virus from Feline calicivirus)

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