Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6w2d
Q-score: 0.28
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6w2e
Q-score: 0.245
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 6q1f
Q-score: 0.213
Zhang Y, Liu W, Li Z, Kumar V, Alvarez-Cabrera AL, Leibovitch EC, Cui Y, Mei Y, Bi GQ, Jacobson S, Zhou ZH
Nat Commun (2019) 10 pp. 5346-5346 [ DOI: doi:10.1038/s41467-019-13064-x Pubmed: 31767868 ]
- Large structural phosphoprotein (95 kDa, Protein from Human herpesvirus 6B (strain Z29))
- Human herpesvirus 6 strain z29 (Virus from Human herpesvirus 6 strain Z29)
- Major capsid protein (152 kDa, Protein from Human herpesvirus 6B (strain Z29))
- Triplex capsid protein 1 (34 kDa, Protein from Human herpesvirus 6B (strain Z29))
- Small capsomere-interacting protein (9 kDa, Protein from Human herpesvirus 6B (strain Z29))
- Triplex capsid protein 2 (33 kDa, Protein from Human herpesvirus 6B (strain Z29))
Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6ppb
Q-score: 0.395
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Capsid vertex component 1 (49 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
- Capsid vertex component 2 (61 kDa, Protein from Human herpesvirus 8)
- Large tegument protein deneddylase (290 kDa, Protein from Human herpesvirus 8)
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ppd
Q-score: 0.426
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6pph
Q-score: 0.428
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell (2019) 178 pp. 1329-1343.e12 [ Pubmed: 31447177 DOI: doi:10.1016/j.cell.2019.07.035 ]
- Triplex capsid protein 1 (36 kDa, Protein from Human herpesvirus 8)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 8)
- Capsid vertex component 1 (49 kDa, Protein from Human herpesvirus 8)
- Major capsid protein (153 kDa, Protein from Human herpesvirus 8)
- Small capsomere-interacting protein (18 kDa, Protein from Human herpesvirus 8)
- Human gammaherpesvirus 8 (Virus from Human gammaherpesvirus 8)
- Capsid vertex component 2 (61 kDa, Protein from Human herpesvirus 8)
- Large tegument protein deneddylase (290 kDa, Protein from Human herpesvirus 8)
Cryo-EM structure of the human alpha5beta3 GABAA receptor in complex with GABA and Nb25
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 6a96
Q-score: 0.375
Liu S, Xu L, Guan F, Liu YT, Cui Y, Zhang Q, Zheng X, Bi GQ, Zhou ZH, Zhang X, Ye S
Cell Res (2018) 28 pp. 958-961 [ Pubmed: 30140029 DOI: doi:10.1038/s41422-018-0077-8 ]
- Gamma-amino-butanoic acid (103 Da, Ligand)
- Pentameric complex of 1 alpha and 4 beta gaba receptor (Complex from Homo sapiens)
- Nb25 (13 kDa, Protein from Lama glama)
- Gamma-aminobutyric acid receptor subunit beta-3,gamma-aminobutyric acid receptor subunit beta-3 (42 kDa, Protein from Homo sapiens)
- Gamma-aminobutyric acid receptor subunit alpha-5,gamma-aminobutyric acid receptor subunit alpha-5 (44 kDa, Protein from Homo sapiens)