Resolution: 2.98 Å
EM Method: Helical reconstruction
Fitted PDBs: 9az6
Q-score: 0.485
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Talin(r13-dd) (Complex from Mus musculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- Talin-1 (26 kDa, Protein from Mus musculus)
- F-actin-talin(r13-dd) complex (Complex)
F-actin-Talin(R13-DD) complex, half-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
F-actin-Talin(R13-DD) complex, single-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
Tomogram of platelet filopodia in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Tomogram of platelet protrusion with microtubule in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
SARS-CoV-2 spike protein closed conformation
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertumpfel C, Mizuno N
J Cell Biol (2022) 221 [ DOI: doi:10.1083/jcb.202106086 Pubmed: 35262630 ]
Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertumpfel C, Mizuno N
J Cell Biol (2022) 221 [ DOI: doi:10.1083/jcb.202106086 Pubmed: 35262630 ]
Cryo-EM structure of human integrin alpha5beta1 in the half-bent conformation
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nxd
Q-score: 0.119
Schumacher S, Dedden D, Nunez RV, Matoba K, Takagi J, Biertumpfel C, Mizuno N
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abe9716 Pubmed: 33962943 ]
- Dimeric complex of integrin a5b1 (200 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Integrin alpha-5 (110 kDa, Protein from Homo sapiens)
- Integrin beta-1 (86 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwl
Q-score: 0.296
Schumacher S, Dedden D, Nunez RV, Matoba K, Takagi J, Biertumpfel C, Mizuno N
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abe9716 Pubmed: 33962943 ]
- Manganese (ii) ion (54 Da, Ligand)
- Integrin alpha-5 (110 kDa, Protein from Homo sapiens)
- Ternary complex of integrin a5b1, fibronectin and ts2/16 fv-clasp (210 kDa, Complex from Homo sapiens)
- Ts2/16 vh(s112c)-sarah chimera (19 kDa, Protein from Mus musculus)
- Ts2/16 vl-sarah(s37c) chimera (18 kDa, Protein from Mus musculus)
- Integrin beta-1 (86 kDa, Protein from Homo sapiens)
- Isoform 1 of fibronectin (39 kDa, Protein from Homo sapiens)