Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7qco
Q-score: 0.326
Semchonok DA, Mondal J, Cooper CJ, Schlum K, Li M, Amin M, Sorzano COS, Ramirez-Aportela E, Kastritis PL, Boekema EJ, Guskov A, Bruce BD
Plant Commun. (2022) 3 pp. 100248-100248 [ DOI: doi:10.1016/j.xplc.2021.100248 Pubmed: 35059628 ]
- Photosystem i reaction center subunit iv (13 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit xi (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit ii (18 kDa, Protein from Chroococcidiopsis sp. TS-821)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit psak (9 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chroococcidiopsis sp. TS-821)
- Photosystem i (1 MDa, Complex from Chroococcidiopsis sp. TS-821)
Structure of 70S ribosome from Lactococcus lactis
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 5myj
Q-score: 0.248
Franken LE, Oostergetel GT, Pijning T, Puri P, Arkhipova V, Boekema EJ, Poolman B, Guskov A
Nat Commun (2017) 8 pp. 722-722 [ Pubmed: 28959045 DOI: doi:10.1038/s41467-017-00718-x ]
- 50s ribosomal protein l17 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l20 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l27 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 70s ribosome (Complex from Lactococcus lactis)
- 30s ribosomal protein s3 (24 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s8 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l33 3 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l36 (4 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l13 (16 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l18 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l6 (19 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l3 (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l22 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l16 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s15 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s6 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s16 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s2 (28 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s20 (8 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l21 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 16s ribosomal rna (497 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- 30s ribosomal protein s18 (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s9 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s7 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l29 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l31 type b (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s13 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 5s ribosomal rna (37 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- 50s ribosomal protein l14 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l15 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l23 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s11 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- Ribosome hibernation promotion factor (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s21 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l34 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l2 (29 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s4 (23 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s12 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s5 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l5 (20 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l32 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l4 (22 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 23s ribosomal rna (938 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
- 30s ribosomal protein s10 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s19 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l19 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l24 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l35 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l30 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 50s ribosomal protein l28 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
- 30s ribosomal protein s17 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 5mdx
Q-score: 0.163
van Bezouwen LS, Caffarri S, Kale RS, Kouril R, Thunnissen AWH, Oostergetel GT, Boekema EJ
Nat Plants (2017) 3 pp. 17080-17080 [ Pubmed: 28604725 DOI: doi:10.1038/nplants.2017.80 ]
- Oxygen-evolving enhancer protein 1-1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein z (6 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein i (4 kDa, Protein from Arabidopsis thaliana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Arabidopsis thaliana)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii cp47 reaction center protein (55 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein k (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein h (7 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein l (4 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein cp29.1, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- C2s2m2 supercomplex of photosystem ii (Complex from Arabidopsis thaliana)
- Photosystem ii reaction center protein t (3 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein m (3 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 1, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein cp26, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center w protein, chloroplastic (6 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b559 subunit beta (psbf) (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem ii reaction center protein x (11 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem ii protein d1 (38 kDa, Protein from Arabidopsis thaliana)
- Fe (ii) ion (55 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Arabidopsis thaliana)
ATP synthase dimer from Tetrahymena thermophila
Chaban Y, Boekema EJ, Dudkina NV
Biochim Biophys Acta (2014) 1837 pp. 418-426 [ DOI: doi:10.1016/j.bbabio.2013.10.004 Pubmed: 24183696 ]
- Atp synthase dimer (600 MDa, Complex from Tetrahymena)
Three-dimensional structure of bovine respirasome by single particle cryo-electron tomography
Dudkina NV, Kudryashev M, Stahlberg H, Boekema EJ
PNAS (2011) 108 pp. 15196-15200 [ Pubmed: 21876144 DOI: doi:10.1073/pnas.1107819108 ]
- Respirasome from bovine mitochondria (1 MDa, Sample)
- Respirasome (1 MDa, Protein from Bos taurus)