Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8qzm
Q-score: 0.506
Wapenaar H, Clifford G, Rolls W, Pasquier M, Burdett H, Zhang Y, Deak G, Zou J, Spanos C, Taylor MRD, Mills J, Watson JA, Kumar D, Clark R, Das A, Valsakumar D, Bramham J, Voigt P, Sproul D, Wilson MD
EMBO Rep (2024) 25 pp. 5743-5779 [ Pubmed: 39528729 DOI: doi:10.1038/s44319-024-00306-3 ]
- Dnmt3a1-dnmt3l in complex with a human h2akc119ub nucleosome wrapped with 195bp of widom-601 positioning dna (147 kDa, Complex from Homo sapiens)
- Histone h3 (fragment) (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Dna (145-mer) (59 kDa, DNA from synthetic construct)
- H2akc119ub nucleosome wrapped with 195 bp widom601 dna (Complex from Homo sapiens)
- Ubiquitin (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (145-mer) (60 kDa, DNA from synthetic construct)
- Dnmt3a1-dnmt3l complex (Complex from Homo sapiens)
- Dna (cytosine-5)-methyltransferase 3a (102 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
Cryo-EM density map of DNMT3A1-DNMT3L on a human H2AKc119ub nucleosome at 5.1 A resolution
Wapenaar H, Clifford G, Rolls W, Pasquier M, Burdett H, Zhang Y, Deak G, Zou J, Spanos C, Taylor MRD, Mills J, Watson JA, Kumar D, Clark R, Das A, Valsakumar D, Bramham J, Voigt P, Sproul D, Wilson MD
EMBO Rep (2024) 25 pp. 5743-5779 [ Pubmed: 39528729 DOI: doi:10.1038/s44319-024-00306-3 ]
- Histone h2ak119c (Protein from Homo sapiens)
- Dnmt3a1-dnmt3l in complex with a human h2akc119ub nucleosome wrapped with 195bp of widom-601 positioning dna (147 kDa, Complex from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Histone h3 (Protein from Homo sapiens)
- Dnmt3a1 (Protein from Homo sapiens)
- Dnmt3l (Protein from Homo sapiens)
- H2akc119ub nucleosome wrapped with 195 bp widom601 dna (Complex from Homo sapiens)
- 195bp widom601 dna (DNA from synthetic construct)
- Ubiquitin (Protein from Homo sapiens)
- Histone h2b (Protein from Homo sapiens)
- Dnmt3a1-dnmt3l complex (Complex from Homo sapiens)
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8off
Q-score: 0.516
Burdett H, Foglizzo M, Musgrove LJ, Kumar D, Clifford G, Campbell LJ, Heath GR, Zeqiraj E, Wilson MD
Nucleic Acids Res (2023) 51 pp. 11080-11103 [ Pubmed: 37823591 DOI: doi:10.1093/nar/gkad793 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Bard1 ard-brcts in complex with h2akc15ub nucleosomes (246 kDa, Complex)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Brca1 associated ring domain 1 (Complex from Felis catus)
- Dna (142-mer) (108 kDa, DNA from Homo sapiens)
- Brca1 associated ring domain 1 (85 kDa, Protein from Felis catus)
- Dna, histones and polyubiquitin-b (Complex from Homo sapiens)
Low-resolution structure of BRCA1dExon11-FL BARD1 (closed state)
Burdett H, Foglizzo M, Musgrove LJ, Kumar D, Clifford G, Campbell LJ, Heath GR, Zeqiraj E, Wilson MD
Nucleic Acids Res (2023) 51 pp. 11080-11103 [ Pubmed: 37823591 DOI: doi:10.1093/nar/gkad793 ]
- Heterodimeric complex of brca1dexon11 and fl bard1 (175 kDa, Complex from Felis catus)
Low-resolution structure of BRCA1dExon11-FL BARD1 (open state)
Burdett H, Foglizzo M, Musgrove LJ, Kumar D, Clifford G, Campbell LJ, Heath GR, Zeqiraj E, Wilson MD
Nucleic Acids Res (2023) 51 pp. 11080-11103 [ Pubmed: 37823591 DOI: doi:10.1093/nar/gkad793 ]
- Heterodimeric complex of brca1dexon11 and fl bard1 (175 kDa, Complex from Felis catus)
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map 2)
Burdett H, Foglizzo M, Musgrove LJ, Kumar D, Clifford G, Campbell LJ, Heath GR, Zeqiraj E, Wilson MD
Nucleic Acids Res (2023) 51 pp. 11080-11103 [ Pubmed: 37823591 DOI: doi:10.1093/nar/gkad793 ]