Structure of BtKY72 spike receptor-binding domain (RBD) complexed with bat ACE2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8k4u
Q-score: 0.479
Su C, He J, Wang L, Hu Y, Cao J, Bai B, Qi J, Gao GF, Yang M, Wang Q
Mbio (2024) 15 pp. e0140424-e0140424 [ Pubmed: 39082798 DOI: doi:10.1128/mbio.01404-24 ]
- Zinc ion (65 Da, Ligand)
- Bat ace2 (Complex)
- Structure of btky72 spike receptor-binding domain (rbd) complexed with bat ace2 (Complex from Severe acute respiratory syndrome-related coronavirus)
- Ace2 (69 kDa, Protein from Rhinolophus landeri)
- Btky72 rbd (Complex from Rhinolophus landeri)
- Btky72 (25 kDa, Protein from Severe acute respiratory syndrome-related coronavirus)
LH2-LH3 antenna in antiparallel configuration embedded in a nanodisc
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8fb9
Q-score: 0.164
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lhii-lhiii complex in nanodisk (200 kDa, Complex from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 alpha chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Light-harvesting protein b-800/850 beta 1 chain (5 kDa, Protein from Magnetospirillum molischianum)
LH2-LH3 antenna in parallel configuration embedded in a nanodisc
Resolution: 11.3 Å
EM Method: Single-particle
Fitted PDBs: 8fbb
Q-score: 0.049
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lhii-lhiii complex in nanodisk (200 kDa, Complex from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 alpha chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Light-harvesting protein b-800/850 beta 1 chain (5 kDa, Protein from Magnetospirillum molischianum)
Cryo-EM structure of VTC complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ytj
Q-score: 0.485
Guan Z, Chen J, Liu R, Chen Y, Xing Q, Du Z, Cheng M, Hu J, Zhang W, Mei W, Wan B, Wang Q, Zhang J, Cheng P, Cai H, Cao J, Zhang D, Yan J, Yin P, Hothorn M, Liu Z
Nat Commun (2023) 14 pp. 718-718 [ Pubmed: 36759618 DOI: doi:10.1038/s41467-023-36466-4 ]
- Inositol hexakisphosphate (660 Da, Ligand)
- Vtc complex (Complex from Saccharomyces cerevisiae)
- Phosphate ion (94 Da, Ligand)
- Vacuolar transporter chaperone 3 (100 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar transporter chaperone 1 (15 kDa, Protein from Saccharomyces cerevisiae)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Vacuolar transporter chaperone 4 (86 kDa, Protein from Saccharomyces cerevisiae)
Human Amylin2 Receptor in complex with Gs and salmon calcitonin peptide
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7tyy
Q-score: 0.509
Cao J, Belousoff MJ, Liang YL, Johnson RM, Josephs TM, Fletcher MM, Christopoulos A, Hay DL, Danev R, Wootten D, Sexton PM
Science (2022) 375 pp. eabm9609-eabm9609 [ Pubmed: 35324283 DOI: doi:10.1126/science.abm9609 ]
- Water (18 Da, Ligand)
- Calcitonin-1 (3 kDa, Protein from Salmo salar)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Human amylin 2 receptor in complex with gs and salmon calcitonin peptide (Complex)
- Calcitonin receptor (58 kDa, Protein from Homo sapiens)
- Nanobody 35 (15 kDa, Protein from Lama glama)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Receptor activity-modifying protein 2 (17 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (45 kDa, Protein from Homo sapiens)
Cryo-EM structure of the yeast mitochondrial SAM-Tom40 complex at 3.0 angstrom
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7e4h
Q-score: 0.445
Wang Q, Guan Z, Qi L, Zhuang J, Wang C, Hong S, Yan L, Wu Y, Cao X, Cao J, Yan J, Zou T, Liu Z, Zhang D, Yan C, Yin P
Science (2021) 373 pp. 1377-1381 [ DOI: doi:10.1126/science.abh0704 Pubmed: 34446444 ]
- Sorting assembly machinery 37 kda subunit (40 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 35 kda subunit (37 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery subunits (Complex from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 50 kda subunit (54 kDa, Protein from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom40 (46 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sam-tom40 complex (Complex from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom40 (Complex)
Cryo-EM structure of the yeast mitochondrial SAM-Tom40/Tom5/Tom6 complex at 3.0 angstrom
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7e4i
Q-score: 0.485
Wang Q, Guan Z, Qi L, Zhuang J, Wang C, Hong S, Yan L, Wu Y, Cao X, Cao J, Yan J, Zou T, Liu Z, Zhang D, Yan C, Yin P
Science (2021) 373 pp. 1377-1381 [ DOI: doi:10.1126/science.abh0704 Pubmed: 34446444 ]
- Sam-tom40/tom5/tom6 complex (Complex from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 37 kda subunit (40 kDa, Protein from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom6 (6 kDa, Protein from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunit tom5 (6 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 35 kda subunit (37 kDa, Protein from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery subunits (Complex from Saccharomyces cerevisiae S288c)
- Sorting assembly machinery 50 kda subunit (54 kDa, Protein from Saccharomyces cerevisiae S288c)
- Mitochondrial import receptor subunits (Complex)
- Mitochondrial import receptor subunit tom40 (43 kDa, Protein from Saccharomyces cerevisiae S288c)