S-ECD (Omicron BA.2.75) in complex with PD of ACE2
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8i9b
Q-score: 0.157
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- Processed angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- S-ecd (omicron ba.2.75) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S-ecd (omicron ba.2.75) (Complex from Homo sapiens)
- Pd of ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
S-ECD (Omicron BF.7) in complex with PD of ACE2
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 8i9c
Q-score: 0.18
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- Pd of ace2 (Complex)
- S-ecd (omicron bf.7) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Processed angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S-ecd (omicron bf.7) (Complex from Homo sapiens)
S-ECD (Omicron XBB.1) in complex with PD of ACE2
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8i9d
Q-score: 0.17
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- Pd of ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-ecd (omicron xbb.1) (Complex from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- S-ecd (omicron xbb.1) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
S-RBD (Omicron BA.2.75) in complex with PD of ACE2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8i9f
Q-score: 0.573
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- S-rbd (omicron ba.2.75) (Complex from Homo sapiens)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- S-rbd (omicron ba.2.75) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Pd of ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
S-RBD (Omicron BF.7) in complex with PD of ACE2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8i9g
Q-score: 0.528
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- Pd of ace2 (Complex)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- S-rbd (omicron bf.7) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-rbd (omicron bf.7) (Complex from Homo sapiens)
S-RBD (Omicron XBB.1) in complex with PD of ACE2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i9h
Q-score: 0.51
Li Y, Ren C, Shen Y, Zhang Y, Chen J, Zheng J, Tian R, Cao L, Yan R
Cell Discov (2023) 9 pp. 108-108 [ DOI: doi:10.1038/s41421-023-00607-2 Pubmed: 37919275 ]
- Pd of ace2 (Complex)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- S-rbd (omicron xbb.1) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-rbd (omicron xbb.1) (Complex from Homo sapiens)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv282
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7we7
Q-score: 0.315
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ DOI: doi:10.1038/s41586-022-04466-x Pubmed: 35090164 ]
- Sars-cov-2 omicron mutation spike protein (Complex)
- Heavy chain of fab 282 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab 282 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Homo sapiens)
- Fab 282 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv265
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7we8
Q-score: 0.363
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ DOI: doi:10.1038/s41586-022-04466-x Pubmed: 35090164 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of fab 265 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of fab 265 (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 265 (Complex)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv289
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7we9
Q-score: 0.349
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ DOI: doi:10.1038/s41586-022-04466-x Pubmed: 35090164 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 289 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The light chain of fab xgv289 (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of fab xgv289 (13 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wea
Q-score: 0.421
Wang K, Jia Z, Bao L, Wang L, Cao L, Chi H, Hu Y, Li Q, Zhou Y, Jiang Y, Zhu Q, Deng Y, Liu P, Wang N, Wang L, Liu M, Li Y, Zhu B, Fan K, Fu W, Yang P, Pei X, Cui Z, Qin L, Ge P, Wu J, Liu S, Chen Y, Huang W, Wang Q, Qin CF, Wang Y, Qin C, Wang X
Nature (2022) 603 pp. 919-925 [ DOI: doi:10.1038/s41586-022-04466-x Pubmed: 35090164 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron mutation spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- The light chain of fab xgv347 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron mutation spike protein in complex with fab 265 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab xgv347 (Complex)
- The heavy chain of fab xgv347 (13 kDa, Protein from Homo sapiens)