Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8p94
Q-score: 0.452
Liu T, Cao L, Mladenov M, Jegou A, Way M, Moores CA
Nat Struct Mol Biol (2024) 31 pp. 801-809 [ DOI: doi:10.1038/s41594-023-01205-2 Pubmed: 38267598 ]
- Actin-related protein 2/3 complex subunit 1b (41 kDa, Protein from Homo sapiens)
- Actin-related protein 2/3 complex subunit 4 (19 kDa, Protein from Homo sapiens)
- Cortactin stabilizes arp2/3-complex nucleated actin branches with daughter filament capped (Complex from Homo sapiens)
- Src substrate cortactin (61 kDa, Protein from Mus musculus)
- Mouse cortactin (Complex from Mus musculus)
- Porcine actin, cytoplasmic 1 (Complex from Sus scrofa)
- Phalloidin (Complex from Amanita phalloides)
- Isoform 2 of f-actin-capping protein subunit beta (30 kDa, Protein from Mus musculus)
- Actin-related protein 2/3 complex subunit 5-like protein (16 kDa, Protein from Homo sapiens)
- Actin-related protein 3 (47 kDa, Protein from Homo sapiens)
- Human arp2/3 c1bc5l complex (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-related protein 2/3 complex subunit 3 (20 kDa, Protein from Homo sapiens)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Mouse capping protein (Complex from Mus musculus)
- Actin-related protein 2/3 complex subunit 2 (34 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Actin-related protein 2 (44 kDa, Protein from Homo sapiens)
- F-actin-capping protein subunit alpha-1 (32 kDa, Protein from Mus musculus)
- Phalloidin (808 Da, Protein from Amanita phalloides)
SARS-COV-2 Spike RBDMACSp36 binding to mACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdk
Q-score: 0.442
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 spike rbdmacsp36-mace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
The cryo-EM structure of HAV bound to a neutralizing antibody-F4
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6jhq
Q-score: -0.029
Cao L, Liu P, Yang P, Gao Q, Li H, Sun Y, Zhu L, Lin J, Su D, Rao Z, Wang X
PLoS Biol (2019) 17 pp. e3000229-e3000229 [ Pubmed: 31039149 DOI: doi:10.1371/journal.pbio.3000229 ]
- Human hepatitis a virus hu/australia/hm175/1976 (Virus from Human hepatitis A virus Hu/Australia/HM175/1976)
- Antibody-f4 (Complex from Mus musculus)
- Human hepatitis a virus hu/australia/hm175/1976 and antibody-f4 (Complex)
- Fab heavy chain (23 kDa, Protein from Mus musculus)
- Vp2 (24 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Fab light chain (23 kDa, Protein from Mus musculus)
- Vp3 (27 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Vp1 (30 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
The cryo-EM structure of HAV bound to a neutralizing antibody-F6
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 6jhr
Q-score: 0.018
Cao L, Liu P, Yang P, Gao Q, Li H, Sun Y, Zhu L, Lin J, Su D, Rao Z, Wang X
PLoS Biol (2019) 17 pp. e3000229-e3000229 [ DOI: doi:10.1371/journal.pbio.3000229 Pubmed: 31039149 ]
- Human hepatitis a virus and antibody-f6 (Complex)
- Vp1 (30 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Vp3 (27 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Antibody-f6 (Complex from Mus musculus)
- Fab heavy chain (24 kDa, Protein from Mus musculus)
- Vp2 (24 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Fab light chain (23 kDa, Protein from Mus musculus)
- Human hepatitis a virus (Virus from Human hepatitis A virus)
The cryo-EM structure of HAV bound to a neutralizing antibody-F7
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6jhs
Q-score: -0.015
Cao L, Liu P, Yang P, Gao Q, Li H, Sun Y, Zhu L, Lin J, Su D, Rao Z, Wang X
PLoS Biol (2019) 17 pp. e3000229-e3000229 [ Pubmed: 31039149 DOI: doi:10.1371/journal.pbio.3000229 ]
- Fab light chain (23 kDa, Protein from Mus musculus)
- Human hepatitis a virus (Virus from Human hepatitis A virus)
- Fab heavy chain (23 kDa, Protein from Mus musculus)
- Vp2 (24 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Antibody-f7 (Complex from Mus musculus)
- Human hepatitis a virus and antibody-f7 (Complex)
- Vp3 (27 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Vp1 (30 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
The cryo-EM structure of HAV bound to a neutralizing antibody-F9
Resolution: 3.79 Å
EM Method: Single-particle
Fitted PDBs: 6jht
Q-score: 0.207
Cao L, Liu P, Yang P, Gao Q, Li H, Sun Y, Zhu L, Lin J, Su D, Rao Z, Wang X
PLoS Biol (2019) 17 pp. e3000229-e3000229 [ DOI: doi:10.1371/journal.pbio.3000229 Pubmed: 31039149 ]
- Fab light chain (23 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Vp1 (30 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Human hepatitis a virus and antibody-f9 (Complex)
- Vp3 (27 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Antibody-f9 (Complex from Mus musculus)
- Fab heavy chain (23 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Vp2 (24 kDa, Protein from Human hepatitis A virus Hu/Australia/HM175/1976)
- Human hepatitis a virus (Virus from Human hepatitis A virus)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 5ywp
Q-score: -0.012
Qiu X, Lei Y, Yang P, Gao Q, Wang N, Cao L, Yuan S, Huang X, Deng Y, Ma W, Ding T, Zhang F, Wu X, Hu J, Liu SL, Qin C, Wang X, Xu Z, Rao Z
Nat Microbiol (2018) 3 pp. 287-294 [ Pubmed: 29379207 DOI: doi:10.1038/s41564-017-0099-x ]
- Jev m protein (8 kDa, Protein from Japanese encephalitis virus)
- 2h4 heavy chain (23 kDa, Protein from Mus musculus)
- 2h4 light chain (23 kDa, Protein from Mus musculus)
- Jev e protein with its mouse antibody h (Complex from Japanese encephalitis virus)
- Jev e protein (53 kDa, Protein from Japanese encephalitis virus)
Structure of JEV-2F2 Fab complex
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 5ywo
Q-score: -0.014
Qiu X, Lei Y, Yang P, Gao Q, Wang N, Cao L, Yuan S, Huang X, Deng Y, Ma W, Ding T, Zhang F, Wu X, Hu J, Liu SL, Qin C, Wang X, Xu Z, Rao Z
Nat Microbiol (2018) 3 pp. 287-294 [ Pubmed: 29379207 DOI: doi:10.1038/s41564-017-0099-x ]
- 2f2 heavy chain (23 kDa, Protein from Mus musculus)
- Complex of jev with 2f2 fab (Complex from Japanese encephalitis virus)
- 2f2 light chain (23 kDa, Protein from Mus musculus)
- Jev m protein (8 kDa, Protein from Japanese encephalitis virus)
- Jev e protein (53 kDa, Protein from Japanese encephalitis virus)