SARS-CoV-2 Spike S2 bound to Fab 54043-5
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8vcr
Q-score: 0.535
Johnson NV, Wall SC, Kramer KJ, Holt CM, Periasamy S, Richardson SI, Manamela NP, Suryadevara N, Andreano E, Paciello I, Pierleoni G, Piccini G, Huang Y, Ge P, Allen JD, Uno N, Shiakolas AR, Pilewski KA, Nargi RS, Sutton RE, Abu-Shmais AA, Parks R, Haynes BF, Carnahan RH, Crowe Jr JE, Montomoli E, Rappuoli R, Bukreyev A, Ross TM, Sautto GA, McLellan JS, Georgiev IS
Structure (2024) 32 pp. 1893- [ DOI: doi:10.1016/j.str.2024.08.022 Pubmed: 39326419 ]
- 54043-5 fab light chain (23 kDa, Protein from Homo sapiens)
- Trimeric s2 bound to fab 54043-5 (Complex)
- Fab 54043-5 (Complex from Homo sapiens)
- S2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2 (65 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 54043-5 fab heavy chain (25 kDa, Protein from Homo sapiens)
Human parainfluenza virus type 3 prefusion F trimer in complex with rPIV3-18 Fab
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8tqk
Q-score: 0.451
Suryadevara N, Otrelo-Cardoso AR, Kose N, Hu YX, Binshtein E, Wolters RM, Greninger AL, Handal LS, Carnahan RH, Moscona A, Jardetzky TS, Crowe Jr JE
Nat Microbiol (2024) 9 pp. 2128-2143 [ DOI: doi:10.1038/s41564-024-01722-w Pubmed: 38858594 ]
- Rpiv3-18 heavy chain (Complex from Homo sapiens)
- Heavy chain fab rpiv3-18 (23 kDa, Protein from Homo sapiens)
- Light chain fab rpiv3-28 (23 kDa, Protein from Homo sapiens)
- Hpiv3 prefusion f trimer in complex with rpiv3-18 fab (Complex from Human respirovirus 3)
- Rpiv3-18 light chain (Complex from Homo sapiens)
- Fusion glycoprotein f0 (57 kDa, Protein from Human respirovirus 3)
- Fusion glycoprotein f0 (Complex from Human respirovirus 3)
RSV F trimer bound to RSV-199 Fab
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8dzw
Q-score: 0.569
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
- Rsv fusion protein complex with rsv-199 fab (Complex from Human respiratory syncytial virus A2)
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
- Rsv fusion protein (53 kDa, Protein from Human respiratory syncytial virus A2)
HMPV F monomer bound to RSV-199 Fab
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8e2u
Q-score: 0.457
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- Rsv-199 light chain (22 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
- Rsv-199 heavy chain (24 kDa, Protein from Homo sapiens)
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8eay
Q-score: 0.403
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- Fusion glycoprotein f0 (45 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with 4i3 fab (Complex from Human metapneumovirus)
- 4i3 light chain protein (11 kDa, Protein from Homo sapiens)
- 4i3 heavy chain protein (13 kDa, Protein from Homo sapiens)
HMPV F dimer bound to RSV-199 Fab
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8ebp
Q-score: 0.426
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6xo4
Q-score: 0.343
Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE
Cell (2020) 183 pp. 1884-1900.e23 [ Pubmed: 33301709 DOI: doi:10.1016/j.cell.2020.11.011 ]
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Togavirin (29 kDa, Protein from Eastern equine encephalitis virus)
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP with Fab EEEV-143.
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 6xob
Q-score: 0.182
Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE
Cell (2020) 183 pp. 1884-1900.e23 [ Pubmed: 33301709 DOI: doi:10.1016/j.cell.2020.11.011 ]
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Togavirin (29 kDa, Protein from Eastern equine encephalitis virus)
- Eeev-143 fab light chain (23 kDa, Protein from Homo sapiens)
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eeev-143 fab heavy chain (23 kDa, Protein from Homo sapiens)
Native Mayaro virus cryo EM map, resolution 4.8 Angstroms
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6w2u
Q-score: 0.439
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699- [ Pubmed: 32783883 DOI: doi:10.1016/j.chom.2020.07.008 ]
- Native mayaro virus (Complex)
- Mayaro virus (Complex from Mayaro virus)
- Spike glycoprotein e1 (41 kDa, Protein from Mayaro virus (strain Brazil))
- Spike glycoprotein e2 (38 kDa, Protein from Mayaro virus (strain Brazil))
Resolution: 6.33 Å
EM Method: Single-particle
Fitted PDBs: 6vyv
Q-score: 0.339
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- E1 glycoprotein (42 kDa, Protein from Ross river virus (strain T48))
- Ross river virus (strain t48) (Virus from Ross river virus (strain T48))
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)
- E2 glycoprotein (38 kDa, Protein from Ross river virus (strain T48))