SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (focused refinement on Fab-RBD)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7wh8
Q-score: 0.523
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ DOI: doi:10.1080/22221751.2023.2245921 Pubmed: 37542391 ]
- Fab-spike (Complex from Homo sapiens)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike (Complex)
- Spike glycoprotein (31 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (3U)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7whb
Q-score: 0.479
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ DOI: doi:10.1080/22221751.2023.2245921 Pubmed: 37542391 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the ZB8 neutralizing antibody Fab (2u1d)
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7whd
Q-score: 0.128
Zhou B, Zhou R, Chan JF, Zeng J, Zhang Q, Yuan S, Liu L, Robinot R, Shan S, Liu N, Ge J, Kwong HY, Zhou D, Xu H, Chan CC, Poon VK, Chu H, Yue M, Kwan KY, Chan CY, Chan CC, Chik KK, Du Z, Au KK, Huang H, Man HO, Cao J, Li C, Wang Z, Zhou J, Song Y, Yeung ML, To KK, Ho DD, Chakrabarti LA, Wang X, Zhang L, Yuen KY, Chen Z
Emerg Microbes Infect (2023) 12 pp. 2245921-2245921 [ DOI: doi:10.1080/22221751.2023.2245921 Pubmed: 37542391 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody zb8 light chain (23 kDa, Protein from Homo sapiens)
- Antibody zb8 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab (Complex)
- Spike (Complex from Homo sapiens)
- Fab-spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Broadly Neutralizing Antibody 10-40 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
Antibody 10-28 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
- Antibody 10-28 in complex with prefusion sars-cov-2 b.1.351 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Antibody 10-28 light (Protein from Homo sapiens)
- Antibody 10-28 heavy (Protein from Homo sapiens)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
Antibody 11-11 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
- Antibody 11-11 light chain (Protein from Homo sapiens)
- Antibody 11-11 heavy chain (Protein from Homo sapiens)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
- Antibody 11-11 in complex with prefusion sars-cov-2 b.1.351 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)