SARS-CoV-2 Delta Spike in complex with JL-8C
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8yro
Q-score: 0.283
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Sars-cov-2 delta spike in complex with jl-8c (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Jl-8c heavy chain (13 kDa, Protein from Homo sapiens)
- Jl-8c light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with JM-1A
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8yrp
Q-score: 0.25
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Jm-1a heavy chain (12 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with jm-1a (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Jm-1a light chain (11 kDa, Protein from Homo sapiens)
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yz5
Q-score: 0.234
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab heavy chain of je-5c (12 kDa, Protein from Homo sapiens)
- Fab light chain of je-5c (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 8yz6
Q-score: 0.21
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab light chain of jh-8b (11 kDa, Protein from Homo sapiens)
- Fab heavy chain of jh-8b (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Spike ectodomain with Fab FI3A
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7q0a
Q-score: 0.18
Huang KA, Zhou D, Tan TK, Chen C, Duyvesteyn HME, Zhao Y, Ginn HM, Qin L, Rijal P, Schimanski L, Donat R, Harding A, Gilbert-Jaramillo J, James W, Tree JA, Buttigieg K, Carroll M, Charlton S, Lien CE, Lin MY, Chen CP, Cheng SH, Chen X, Lin TY, Fry EE, Ren J, Ma C, Townsend AR, Stuart DI
Theranostics (2022) 12 pp. 1-17 [ Pubmed: 34987630 DOI: doi:10.7150/thno.65563 ]
- Fi3a fab light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fi3a fab heavy chain (12 kDa, Protein from Homo sapiens)
- Sars-cov2 spike ectodomain with fi3a fab (21 GDa, Complex)
- Sars-cov2 spike ectodomain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fi3a fab (Complex from Homo sapiens)
- Spike glycoprotein,spike ectodomain,spike protein s2' (145 kDa, Protein from Bat coronavirus Rp3/2004)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6zdg
Q-score: 0.237
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike ectodomain with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)
Association of two complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6zfo
Q-score: 0.191
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike ectodomain with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike glycoprotein in complex with a neutralizing antibody EY6A Fab
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6zdh
Q-score: 0.364
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike glycoprotein with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)