Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7ram
Q-score: 0.452
Liu J, Vanarsdall A, Chen DH, Chin A, Johnson D, Jardetzky TS
Mbio (2021) 12 pp. e0262521-e0262521 [ Pubmed: 34700375 DOI: doi:10.1128/mBio.02625-21 ]
- Hcmv trimer in complex with receptor pdgfralpha (Complex from Human herpesvirus 5 strain AD169)
- Platelet-derived growth factor receptor alpha (59 kDa, Protein from Homo sapiens)
- Human platelet-derived growth factor receptor alpha extracellular domain (Complex from Homo sapiens)
- Envelope glycoprotein l (27 kDa, Protein from Human herpesvirus 5 strain AD169)
- Envelope glycoprotein o (53 kDa, Protein from Human betaherpesvirus 5)
- Envelope glycoprotein h (80 kDa, Protein from Human herpesvirus 5 strain AD169)
Head-Middle module of Mediator
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6xp5
Q-score: 0.337
Zhang H, Chen DH, Mattoo RUH, Bushnell DA, Wang Y, Yuan C, Wang L, Wang C, Davis RE, Nie Y, Kornberg RD
Mol Cell (2021) 81 pp. 1781-1788.e4 [ DOI: doi:10.1016/j.molcel.2021.01.022 Pubmed: 33571424 ]
- Mediator of rna polymerase ii transcription subunit 4 (37 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 11 (25 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Heat (17 kDa, Protein from Chaetomium thermophilum)
- Mediator of rna polymerase ii transcription subunit 9 (18 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 7 (27 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 8 (32 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 1 (81 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Head-middle module of mediator (Complex from Chaetomium thermophilum)
- Mediator of rna polymerase ii transcription subunit 31 (14 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 21 (15 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 17 (69 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 18 (38 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 14 (133 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Med22 (18 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 6 (36 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Unknown peptide (1 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 7jmn
Q-score: 0.466
Zhang H, Chen DH, Mattoo RUH, Bushnell DA, Wang Y, Yuan C, Wang L, Wang C, Davis RE, Nie Y, Kornberg RD
Mol Cell (2021) 81 pp. 1781-1788.e4 [ DOI: doi:10.1016/j.molcel.2021.01.022 Pubmed: 33571424 ]
- Unknown peptide (4 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Mediator of rna polymerase ii transcription subunit 5 (118 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Mediator of rna polymerase ii transcription subunit 16 (123 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- T module complex (Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
- Mediator of rna polymerase ii transcription subunit 14 (133 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
- Med15 (175 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6vn1
Q-score: 0.582
Oliver SL, Xing Y, Chen DH, Roh SH, Pintilie GD, Bushnell DA, Sommer MH, Yang E, Carfi A, Chiu W, Arvin AM
Nat Commun (2020) 11 pp. 4141-4141 [ DOI: doi:10.1038/s41467-020-17911-0 Pubmed: 32811830 ]
- Varicella zoster virus glycoprotein b in complex with fab fragments derived from human monoclonal antibody 93k (750 kDa, Complex)
- Human monoclonal antibody 93k fab (Complex from Homo sapiens)
- Varicella zoster virus glycoprotein b (Complex from Human herpesvirus 3)
- Envelope glycoprotein b (105 kDa, Protein from Human alphaherpesvirus 3)
- Human monoclonal antibody 93k variable heavy chain (13 kDa, Protein from Homo sapiens)
- Human monoclonal antibody 93k variable light chain (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of the Dvl2 DIX filament
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 6vcc
Q-score: 0.388
Kan W, Enos MD, Korkmazhan E, Muennich S, Chen DH, Gammons MV, Vasishtha M, Bienz M, Dunn AR, Skiniotis G, Weis WI
eLife (2020) 9 [ DOI: doi:10.7554/eLife.55015 Pubmed: 32297861 ]
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 3zpz
Q-score: 0.138
Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS
Cell (2013) 153 pp. 1354-1365 [ Pubmed: 23746846 DOI: doi:10.1016/j.cell.2013.04.052 ]
- Groel variant el43py capped by groes with the assistance of nucleotide atp (870 kDa, Sample)
- Groelcys0-d398a-s43c-pyrene (800 kDa, Protein from Escherichia coli K-12)
- Adenosine triphosphate (Ligand from synthetic construct)
- Groes (70 kDa, Protein from Escherichia coli K-12)
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Resolution: 9.2 Å
EM Method: Single-particle
Fitted PDBs: 3zq0
Q-score: 0.114
Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS
Cell (2013) 153 pp. 1354-1365 [ Pubmed: 23746846 DOI: doi:10.1016/j.cell.2013.04.052 ]
- Groelcys0-d398a-s43c-pyrene (800 kDa, Protein from Escherichia coli K-12)
- Ribulose-1,5-bisphosphate carboxylase oxygenase (50 kDa, Protein from Rhodospirillum rubrum)
- Groes (70 kDa, Protein from Escherichia coli K-12)
- Non-native rubisco substrate protein encapsulated inside the cavity of groel variant el43py capped by groes with the assistance of nucleotide atp (920 kDa, Sample)
- Adenosine triphosphate (Ligand from synthetic construct)
Visualizing GroEL/ES in the Act of Encapsulating a Non-Native Substrate Protein
Resolution: 15.9 Å
EM Method: Single-particle
Fitted PDBs: 3zq1
Q-score: 0.067
Chen D-H, Madan D, Weaver J, Lin Z, Schroder GF, Chiu W, Rye HS
Cell (2013) 153 pp. 1354-1365 [ Pubmed: 23746846 DOI: doi:10.1016/j.cell.2013.04.052 ]
- Groel-d398a (800 kDa, Protein from Escherichia coli K-12)
- Ribulose-1,5-bisphosphate carboxylase oxygenase (50 kDa, Protein from Rhodospirillum rubrum)
- Groes (70 kDa, Protein from Escherichia coli K-12)
- Non-native rubisco substrate protein encapsulated inside the cavity of groel capped by groes with the assistance of nucleotide atp (920 kDa, Sample)
- Adenosine triphosphate (Ligand from synthetic construct)
Native, unliganded GroEL, D7 symmetrized, 4.2 A resolution 0.5 criterion
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 3cau
Q-score: 0.161
Ludtke SJ, Baker ML, Chen DH, Song JL, Chuang DT, Chiu W
Structure (2008) 16 pp. 441-448 [ DOI: doi:10.1016/j.str.2008.02.007 Pubmed: 18334219 ]
- Native unliganded groel, residual adp (800 kDa, Sample)
- Groel (800 kDa, Protein from Escherichia coli)
Native, unliganded GroEL, C7 symmetrized, 4.7 A resolution 0.5 criterion
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 3c9v
Q-score: 0.174
Ludtke SJ, Baker ML, Chen DH, Song JL, Chuang DT, Chiu W
Structure (2008) 16 pp. 441-448 [ DOI: doi:10.1016/j.str.2008.02.007 Pubmed: 18334219 ]
- Native unliganded groel, residual adp (800 kDa, Sample)
- Groel (800 kDa, Protein from Escherichia coli)