structure of phage T6 topoisomerase II central domain bound with DNA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
To Be Published
- Dna(5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap)) (6 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*a)-3') (6 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Salmonella phage Chi)
- Phage t6 topoisomerase ii central domian bound with g-segment dna (Complex from Enterobacteria phage T6)
structure of phage T6 topoisomerase II ATPase domain bound with AMPPNP
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yo1
Q-score: 0.414
To Be Published
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Phage t6 topoisomerase ii atpase domain bound with amppnp (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Magnesium ion (24 Da, Ligand)
structure of phage T4 topoisomerase II central domain
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8yo3
Q-score: 0.427
To Be Published
structure of phage T4 topoisomerase II central domain bound with DNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
To Be Published
- Dna (5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap*tp*a)-3') (16 kDa, DNA from DNA molecule)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*ap*t)-3') (15 kDa, DNA from DNA molecule)
- Phage t4 topoisomerase ii gp39-gp60 subunit (77 kDa, Protein from Escherichia phage T4)
- Phage t4 topoisomerase ii central domian bound with g-segment dna (Complex from Escherichia phage T4)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T6 topoisomerase II central domain
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yo5
Q-score: 0.408
To Be Published
structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
To Be Published
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*t)-3') (16 kDa, DNA from DNA molecule)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Phage t6 topoisomerase ii central domain bound with dna and m-amsa (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*a)-3') (15 kDa, DNA from DNA molecule)
structure of phage T4 topoisomerase II gp52 subunit WHD-open state
Resolution: 6.12 Å
EM Method: Single-particle
Fitted PDBs: 8yo9
Q-score: 0.111
To Be Published
structure of phage T6 apo full-length topoisomerase II
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 8yod
Q-score: 0.085
To Be Published
- Phage t6 apo full-length topoisomerase ii (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T6 full-length topoisomerase II bound with DNA
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
To Be Published
- Dna (50-mer) (16 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Phage t6 full-length topoisomerase ii bound with dna (Complex from Enterobacteria phage T6)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8gk7
Q-score: 0.364
Wang H, Ishchenko A, Skudlarek J, Shen P, Dzhekieva L, Painter RE, Chen YT, Bukhtiyarova M, Leithead A, Tracy R, Babaoglu K, Bahnck-Teets C, Buevich A, Cabalu TD, Labroli M, Lange H, Lei Y, Li W, Liu J, Mann PA, Meng T, Mitchell HJ, Mulhearn J, Scapin G, Sha D, Shaw AW, Si Q, Tong L, Wu C, Wu Z, Xiao JC, Xu M, Zhang LK, McKenney D, Miller RR, Black TA, Cooke A, Balibar CJ, Klein DJ, Raheem I, Walker SS
Nat Microbiol (2024) 9 pp. 1244-1255 [ Pubmed: 38649414 DOI: doi:10.1038/s41564-024-01667-0 ]
- Lipid a export atp-binding/permease protein msba (66 kDa, Protein from Acinetobacter baumannii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Msba complexed with cerastecin c (450 kDa, Complex from Acinetobacter baumannii)
- 2-[(4-butylbenzene-1-sulfonyl)amino]-5-[(3-{4-[(4-butylbenzene-1-sulfonyl)amino]-3-carboxyanilino}-3-oxopropyl)carbamoyl]benzoic acid (778 Da, Ligand)