Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xal
Q-score: 0.321
Chang YH, Hsu MF, Chen WN, Wu MH, Kong WL, Lu MJ, Huang CH, Chang FJ, Chang LY, Tsai HY, Tung CP, Yu JH, Kuo Y, Chou YC, Bai LY, Chang YC, Chen AY, Chen CC, Chen YH, Liao CC, Chang CS, Liang JJ, Lin YL, Angata T, Hsu SD, Lin KI
JCI Insight (2024) 9 [ DOI: doi:10.1172/jci.insight.179726 Pubmed: 38775156 ]
- Sars-cov-2 s-bq.1 and ace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2,green fluorescent protein (fragment) (98 kDa, Protein from Aequorea victoria)
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8xbf
Q-score: 0.257
Chang YH, Hsu MF, Chen WN, Wu MH, Kong WL, Lu MJ, Huang CH, Chang FJ, Chang LY, Tsai HY, Tung CP, Yu JH, Kuo Y, Chou YC, Bai LY, Chang YC, Chen AY, Chen CC, Chen YH, Liao CC, Chang CS, Liang JJ, Lin YL, Angata T, Hsu SD, Lin KI
JCI Insight (2024) 9 [ DOI: doi:10.1172/jci.insight.179726 Pubmed: 38775156 ]
- Sars-cov-2 s-bq.1 and antibody o5c2 complex (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody o5c2, heavy chain (Complex from Homo sapiens)
- Bq.1 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- O5c2, heavy chain (13 kDa, Protein from Homo sapiens)
- O5c2, light chain (11 kDa, Protein from Homo sapiens)
- Antibody o5c2, light chain (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with JL-8C
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8yro
Q-score: 0.283
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Sars-cov-2 delta spike in complex with jl-8c (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Jl-8c heavy chain (13 kDa, Protein from Homo sapiens)
- Jl-8c light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with JM-1A
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8yrp
Q-score: 0.25
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Jm-1a heavy chain (12 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with jm-1a (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Jm-1a light chain (11 kDa, Protein from Homo sapiens)
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yz5
Q-score: 0.234
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab heavy chain of je-5c (12 kDa, Protein from Homo sapiens)
- Fab light chain of je-5c (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 8yz6
Q-score: 0.21
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Kit Tan T, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) 20 pp. e1012246-e1012246 [ DOI: doi:10.1371/journal.ppat.1012246 Pubmed: 38857264 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab light chain of jh-8b (11 kDa, Protein from Homo sapiens)
- Fab heavy chain of jh-8b (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with FP-12A
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8hhx
Q-score: 0.301
Huang KA, Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Vester SK, Hills RA, Howarth M, Keeffe JR, Cohen AA, Kakutani LM, Wu YM, Shahed-Al-Mahmud M, Chou YC, Bjorkman PJ, Townsend AR, Ma C
Nat Commun (2023) 14 pp. 311-311 [ Pubmed: 36658148 DOI: doi:10.1038/s41467-023-35949-8 ]
- Complex of delta spike and fp-12a with two fabs bound to one spike in 3-rbd-up conformation (550 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fp-12a fab heavy chain (23 kDa, Protein from Homo sapiens)
- Fp-12a fab light chain (23 kDa, Protein from Homo sapiens)
- Fp-12a (Complex from Homo sapiens)
SARS-CoV-2 Delta Spike in complex with IS-9A
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8hhy
Q-score: 0.313
Huang KA, Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Vester SK, Hills RA, Howarth M, Keeffe JR, Cohen AA, Kakutani LM, Wu YM, Shahed-Al-Mahmud M, Chou YC, Bjorkman PJ, Townsend AR, Ma C
Nat Commun (2023) 14 pp. 311-311 [ Pubmed: 36658148 DOI: doi:10.1038/s41467-023-35949-8 ]
- Complex of delta spike and is-9a with two fabs bound to one spike in 3-rbd-up conformation (550 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Is-9a fab heavy chain (24 kDa, Protein from Homo sapiens)
- Is-9a fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Is-9a fab (Complex from Homo sapiens)
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Resolution: 4.28 Å
EM Method: Single-particle
Fitted PDBs: 8hhz
Q-score: 0.207
Huang KA, Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Vester SK, Hills RA, Howarth M, Keeffe JR, Cohen AA, Kakutani LM, Wu YM, Shahed-Al-Mahmud M, Chou YC, Bjorkman PJ, Townsend AR, Ma C
Nat Commun (2023) 14 pp. 311-311 [ Pubmed: 36658148 DOI: doi:10.1038/s41467-023-35949-8 ]
- Iy-2a fab heavy chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Iy-2a fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Complex of delta spike and iy-2a with two fabs bound to one spike in 3-rbd-up conformation (550 kDa, Complex)
- Iy-2a (Complex from Homo sapiens)
SARS-CoV-2 Spike in complex with Fab of m31A7
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7wuh
Q-score: 0.245
Huang HY, Liao HY, Chen X, Wang SW, Cheng CW, Shahed-Al-Mahmud M, Liu YM, Mohapatra A, Chen TH, Lo JM, Wu YM, Ma HH, Chang YH, Tsai HY, Chou YC, Hsueh YP, Tsai CY, Huang PY, Chang SY, Chao TL, Kao HC, Tsai YM, Chen YH, Wu CY, Jan JT, Cheng TR, Lin KI, Ma C, Wong CH
Sci Transl Med (2022) 14 pp. eabm0899-eabm0899 [ DOI: doi:10.1126/scitranslmed.abm0899 Pubmed: 35230146 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- M31a7 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Sars-cov2 spike in complex with m31a7 (560 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- M31a7 (Complex)
- Sars-cov2 spike (Complex from Homo sapiens)
- M31a7 fab light chain (26 kDa, Protein from Homo sapiens)