Reconstruction from 120,000 particles of apoferritin imaged with a square aperture
Chua EYD, Alink LM, Kopylov M, Johnson J, Eisenstein F, de Marco A
To Be Published
- Apoferritin (450 kDa, Complex from Mus musculus)
Reconstruction from 120,000 particles of apoferritin imaged with a round aperture
Chua EYD, Alink LM, Kopylov M, Johnson J, Eisenstein F, de Marco A
To Be Published
- Apoferritin (450 kDa, Complex from Mus musculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8qyv
Q-score: 0.324
Jalal ASB, Girvan P, Chua EYD, Liu L, Wang S, McCormack EA, Skehan MT, Knight CL, Rueda DS, Wigley DB
Mol Cell (2024) 84 pp. 3871- [ Pubmed: 39226902 DOI: doi:10.1016/j.molcel.2024.08.015 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Helicase swr1 (174 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (118-mer) (36 kDa, DNA from synthetic construct)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 72 (90 kDa, Protein from Saccharomyces cerevisiae S288C)
- Actin-like protein arp6 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 71 (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (118-mer) (36 kDa, DNA from synthetic construct)
- Ruvb-like protein 2 (51 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swr1-hexasome complex (Complex from Saccharomyces cerevisiae S288C)
- Swr1-complex protein 5 (34 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8qz0
Q-score: 0.293
Jalal ASB, Girvan P, Chua EYD, Liu L, Wang S, McCormack EA, Skehan MT, Knight CL, Rueda DS, Wigley DB
Mol Cell (2024) 84 pp. 3871- [ Pubmed: 39226902 DOI: doi:10.1016/j.molcel.2024.08.015 ]
- Dna (113-mer) (36 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (113-mer) (36 kDa, DNA from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2a.z (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2a.z-specific chaperone chz1 (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swr1-hexasome-dimer complex (Complex from Saccharomyces cerevisiae S288C)
- Actin-like protein arp6 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 71 (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (51 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 72 (90 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Helicase swr1 (174 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Beryllium trifluoride ion (66 Da, Ligand)
- Swr1-complex protein 5 (34 kDa, Protein from Saccharomyces cerevisiae S288C)
SWR1 lacking Swc5 subunit in complex with hexasome
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 9fbw
Q-score: 0.193
Jalal ASB, Girvan P, Chua EYD, Liu L, Wang S, McCormack EA, Skehan MT, Knight CL, Rueda DS, Wigley DB
Mol Cell (2024) 84 pp. 3871- [ Pubmed: 39226902 DOI: doi:10.1016/j.molcel.2024.08.015 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Helicase swr1 (174 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (112-mer) (34 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Dna (112-mer) (34 kDa, DNA from synthetic construct)
- Histone h2b.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 1 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 72 (90 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- Actin-like protein arp6 (50 kDa, Protein from Saccharomyces cerevisiae S288C)
- Vacuolar protein sorting-associated protein 71 (32 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swr1 lacking swc5 subunit in complex with hexasome (Complex from Saccharomyces cerevisiae S288C)
- Ruvb-like protein 2 (51 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
Mouse apoferritin imaged with a square aperture
Chua EYD, Alink LM, Kopylov M, Johnston JD, Eisenstein F, de Marco A
Nat Methods (2024) 21 pp. 562-565 [ DOI: doi:10.1038/s41592-023-02161-x Pubmed: 38238558 ]
- Apoferritin (450 kDa, Complex from Mus musculus)
Mouse apoferritin imaged with a round aperture
Chua EYD, Alink LM, Kopylov M, Johnston JD, Eisenstein F, de Marco A
Nat Methods (2024) 21 pp. 562-565 [ DOI: doi:10.1038/s41592-023-02161-x Pubmed: 38238558 ]
- Apoferritin (450 kDa, Complex from Mus musculus)
Chua EYD, Alink LM, Kopylov M, Johnston JD, Eisenstein F, de Marco A
Nat Methods (2024) 21 pp. 562-565 [ DOI: doi:10.1038/s41592-023-02161-x Pubmed: 38238558 ]
- Apoferritin (450 kDa, Complex from Mus musculus)
Chua EYD, Alink LM, Kopylov M, Johnston JD, Eisenstein F, de Marco A
Nat Methods (2024) 21 pp. 562-565 [ DOI: doi:10.1038/s41592-023-02161-x Pubmed: 38238558 ]
- Apoferritin (450 kDa, Complex from Mus musculus)
Chua EYD, Alink LM, Kopylov M, Johnston JD, Eisenstein F, de Marco A
Nat Methods (2024) [ DOI: doi:10.1038/s41592-023-02161-x Pubmed: 38238558 ]