SV40 large T antigen assembly with DNA in presence of ADP
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 9evh
Q-score: 0.593
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Dna (2 kDa, DNA from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Large t antigen with dna in presence of adp. (Complex)
- Large t antigen (81 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
SV40 LTAg assembly with DNA in presence of AMPPNP and Mg2+.
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 9evp
Q-score: 0.627
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Dna (2 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Sv40 large t antigen assembly (Complex from Betapolyomavirus macacae)
- Sv40 large t antigen assembly with dna in presence of amppnp and mg2+. (Complex)
SV40 LTAg assembly in presence of ATP.
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9exd
Q-score: 0.576
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large t antigen (Complex from Betapolyomavirus macacae)
- Large t antigen (Complex)
- Large t antigen (81 kDa, Protein from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_010).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f3t
Q-score: 0.503
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (2 kDa, DNA from synthetic construct)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_001, frame_010).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f3u
Q-score: 0.501
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (2 kDa, DNA from synthetic construct)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_005).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f5i
Q-score: 0.498
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (2 kDa, DNA from synthetic construct)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_002, frame_015).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f73
Q-score: 0.494
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Chains: s (2 kDa, DNA from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_015).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f74
Q-score: 0.518
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Chains: s (2 kDa, DNA from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_019).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f75
Q-score: 0.514
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Chains: s (2 kDa, DNA from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)
Active SV40 LTAg complex with DNA (3D variability component_000, frame_000).
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9f7n
Q-score: 0.489
Shahid T, Danazumi AU, Tehseen M, Alhudhali L, Clark AR, Savva CG, Hamdan SM, De Biasio A
Nature (2025) [ ]
- Sv40 large t antigen complex with dna in presence of atp and mg2+. (Complex)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Large t antigen (41 kDa, Protein from Betapolyomavirus macacae)
- Dna (Complex from synthetic construct)
- Chains: s (2 kDa, DNA from synthetic construct)
- Large t antigen (Complex from Betapolyomavirus macacae)