NuA4 Histone Acetyltransferase Complex (Composite)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7zvw
Q-score: 0.309
Frechard A, Faux C, Hexnerova R, Crucifix C, Papai G, Smirnova E, McKeon C, Ping FLY, Helmlinger D, Schultz P, Ben-Shem A
Nat Struct Mol Biol (2023) 30 pp. 1337-1345 [ Pubmed: 37550452 DOI: doi:10.1038/s41594-023-01056-x ]
- Nua4 histone acetyltransferase complex (Complex from Komagataella phaffii GS115)
- Chromatin modification-related protein eaf1 (118 kDa, Protein from Komagataella phaffii GS115)
- Transcription-associated protein (438 kDa, Protein from Komagataella phaffii GS115)
- Actin (53 kDa, Protein from Komagataella phaffii GS115)
- Swr1-complex protein 4 (64 kDa, Protein from Komagataella phaffii GS115)
- Enhancer of polycomb-like protein (86 kDa, Protein from Komagataella phaffii GS115)
- Actin (41 kDa, Protein from Komagataella phaffii GS115)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (the consensus NusG-EC)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7py1
Q-score: 0.343
Zhu C, Guo X, Dumas P, Takacs M, Abdelkareem M, Vanden Broeck A, Saint-Andre C, Papai G, Crucifix C, Ortiz J, Weixlbaumer A
Nat Commun (2022) 13 pp. 1546-1546 [ DOI: doi:10.1038/s41467-022-29148-0 Pubmed: 35318334 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (11 kDa, DNA from Escherichia coli)
- Ntdna (12 kDa, DNA from Escherichia coli)
- Nusg elongation complex (consensus) (Complex from Escherichia coli)
- Rna (4 kDa, RNA from Escherichia coli)
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (the consensus NusA-EC)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7py3
Q-score: 0.365
Zhu C, Guo X, Dumas P, Takacs M, Abdelkareem M, Vanden Broeck A, Saint-Andre C, Papai G, Crucifix C, Ortiz J, Weixlbaumer A
Nat Commun (2022) 13 pp. 1546-1546 [ DOI: doi:10.1038/s41467-022-29148-0 Pubmed: 35318334 ]
- Zinc ion (65 Da, Ligand)
- Transcription termination/antitermination protein nusa (54 kDa, Protein from Escherichia coli MS 115-1)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Cryoem structure of e.coli rna polymerase elongation complex bound to nusa (the consensus nusa-ec) (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (11 kDa, DNA from Escherichia coli)
- Ntdna (12 kDa, DNA from Escherichia coli)
- Rna (4 kDa, RNA from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7py5
Q-score: 0.367
Zhu C, Guo X, Dumas P, Takacs M, Abdelkareem M, Vanden Broeck A, Saint-Andre C, Papai G, Crucifix C, Ortiz J, Weixlbaumer A
Nat Commun (2022) 13 pp. 1546-1546 [ DOI: doi:10.1038/s41467-022-29148-0 Pubmed: 35318334 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Transcription termination/antitermination protein nusa (54 kDa, Protein from Escherichia coli)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli)
- Ntdna (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (11 kDa, DNA from Escherichia coli)
- Nusa and nusg elongation complex (consensus) (Complex from Escherichia coli)
- Rna (4 kDa, RNA from Escherichia coli)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7py8
Q-score: 0.309
Zhu C, Guo X, Dumas P, Takacs M, Abdelkareem M, Vanden Broeck A, Saint-Andre C, Papai G, Crucifix C, Ortiz J, Weixlbaumer A
Nat Commun (2022) 13 pp. 1546-1546 [ DOI: doi:10.1038/s41467-022-29148-0 Pubmed: 35318334 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Nusg elongation complex in less-swiveled conformation (Complex from Escherichia coli)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (11 kDa, DNA from Escherichia coli)
- Ntdna (12 kDa, DNA from Escherichia coli)
- Rna (4 kDa, RNA from Escherichia coli)
Cryo-EM structure of E. coli RNA polymerase elongation complex bound to CTP substrate
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6rh3
Q-score: 0.473
Abdelkareem M, Saint-Andre C, Takacs M, Papai G, Crucifix C, Guo X, Ortiz J, Weixlbaumer A
Mol Cell (2019) 75 pp. 298-309.e4 [ Pubmed: 31103420 DOI: doi:10.1016/j.molcel.2019.04.029 ]
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Cryo-em structure of e. coli rna polymerase elongation complex bound to ctp substrate (Complex)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Template dna (11 kDa, DNA from Escherichia coli K-12)
- Rna polymerase (Complex from Escherichia coli K-12)
- Rna (4 kDa, RNA from Escherichia coli K-12)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Non-template dna (12 kDa, DNA from Escherichia coli K-12)
- Cytidine-5'-triphosphate (483 Da, Ligand)
- Nucleic acids (Complex from Escherichia coli K-12)
Cryo-EM structure of E. coli RNA polymerase elongation complex bound to GreB transcription factor
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ri7
Q-score: 0.369
Abdelkareem M, Saint-Andre C, Takacs M, Papai G, Crucifix C, Guo X, Ortiz J, Weixlbaumer A
Mol Cell (2019) 75 pp. 298-309.e4 [ Pubmed: 31103420 DOI: doi:10.1016/j.molcel.2019.04.029 ]
- Rna polymerase elongation complex (Complex from Escherichia coli K-12)
- Rna (4 kDa, RNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Template dna (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Nucleic acid (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Non-template dna (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Greb (Complex from Escherichia coli)
- Transcription elongation factor greb (18 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of e. coli rna polymerase elongation complex bound to greb transcription factor (Complex)
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in non-swiveled state
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ri9
Q-score: 0.425
Abdelkareem M, Saint-Andre C, Takacs M, Papai G, Crucifix C, Guo X, Ortiz J, Weixlbaumer A
Mol Cell (2019) 75 pp. 298-309.e4 [ Pubmed: 31103420 DOI: doi:10.1016/j.molcel.2019.04.029 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Non-template dna (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Cryo-em structure of e. coli rna polymerase backtracked elongation complex in non-swiveled state (Complex)
- Template dna (12 kDa, DNA from Escherichia coli)
- Rna polymerase (Complex from Escherichia coli K-12)
- Nucleic acids (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (4 kDa, RNA from Escherichia coli)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6rin
Q-score: 0.415
Abdelkareem M, Saint-Andre C, Takacs M, Papai G, Crucifix C, Guo X, Ortiz J, Weixlbaumer A
Mol Cell (2019) 75 pp. 298-309.e4 [ Pubmed: 31103420 DOI: doi:10.1016/j.molcel.2019.04.029 ]
- Zinc ion (65 Da, Ligand)
- Rna polymerase and greb (Complex from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Non-template dna (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Cryo-em structure of e. coli rna polymerase backtracked elongation complex bound to greb transcription factor (Complex)
- Template dna (12 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Nucleic acids (Complex from Escherichia coli K-12)
- Transcription elongation factor greb (18 kDa, Protein from Escherichia coli K12)
- Rna (4 kDa, RNA from Escherichia coli)
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex in swiveled state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6rip
Q-score: 0.456
Abdelkareem M, Saint-Andre C, Takacs M, Papai G, Crucifix C, Guo X, Ortiz J, Weixlbaumer A
Mol Cell (2019) 75 pp. 298-309.e4 [ Pubmed: 31103420 DOI: doi:10.1016/j.molcel.2019.04.029 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli (strain K12))
- Non-template dna (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Template dna (12 kDa, DNA from Escherichia coli)
- Rna polymerase (Complex from Escherichia coli K-12)
- Nucleic acids (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (4 kDa, RNA from Escherichia coli)
- Cryo-em structure of e. coli rna polymerase backtracked elongation complex in swiveled state (Complex)