Porcine Retinol-Binding Protein 3 (RBP3)
Kaushik V, Gessa L, Kumar N, Pinkas M, Czarnocki-Cieciura M, Palczewski K, Novacek J, Fernandes H
Open Biol (2025) 15 pp. 240180-240180 [ DOI: doi:10.1098/rsob.240180 Pubmed: 39837501 ]
- Retinol binding protein 3 (Protein from Sus scrofa)
- Retinol binding protein 3 (135 MDa, Cellular component from Sus scrofa)
Single particle reconstruction of human apo TRPM8 channel in a closed state
Palchevskyi S, Czarnocki-Cieciura M, Vistoli G, Gervasoni S, Nowak E, Beccari AR, Nowotny M, Talarico C
Commun Biol (2023) 6 [ DOI: 10.1038/s42003-023-05425-6 Pubmed: 37857704 ]
Image sets:
Cryo-EM structure of Rotavirus B NSP2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8p00
Q-score: 0.442
Chamera S, Wycisk K, Czarnocki-Cieciura M, Nowotny M
J Virol (2024) 98 pp. e0166023-e0166023 [ DOI: doi:10.1128/jvi.01660-23 Pubmed: 38421167 ]
- Homooctamer of nsp2 (Complex from Rotavirus B)
- Non-structural protein 2 (34 kDa, Protein from Human rotavirus B strain CAL-1)
Human apo TRPM8 in a closed state (composite map)
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8bdc
Q-score: 0.573
Palchevskyi S, Czarnocki-Cieciura M, Vistoli G, Gervasoni S, Nowak E, Beccari AR, Nowotny M, Talarico C
Commun Biol (2023) 6 pp. 1065-1065 [ DOI: doi:10.1038/s42003-023-05425-6 Pubmed: 37857704 ]
- Transient receptor potential cation channel subfamily m member 8 (127 kDa, Protein from Homo sapiens)
- Undecane (156 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Human trpm8 in apo form (510 kDa, Complex from Homo sapiens)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Human apo TRPM8 in a closed state (consensus map)
Palchevskyi S, Czarnocki-Cieciura M, Vistoli G, Gervasoni S, Nowak E, Beccari AR, Nowotny M, Talarico C
Commun Biol (2023) 6 pp. 1065-1065 [ DOI: doi:10.1038/s42003-023-05425-6 Pubmed: 37857704 ]
- Human trpm8 in apo form (510 kDa, Complex from Homo sapiens)
- Trpm8 (Protein from Homo sapiens)
Human apo TRPM8 in a closed state (focused pre-MHR + MHR1/2 map)
Palchevskyi S, Czarnocki-Cieciura M, Vistoli G, Gervasoni S, Nowak E, Beccari AR, Nowotny M, Talarico C
Commun Biol (2023) 6 pp. 1065-1065 [ DOI: doi:10.1038/s42003-023-05425-6 Pubmed: 37857704 ]
- Human trpm8 in apo form (510 kDa, Complex from Homo sapiens)
- Trpm8 (Protein from Homo sapiens)
Complex of RecF and DNA from Thermus thermophilus.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8a8j
Q-score: 0.556
Nirwal S, Czarnocki-Cieciura M, Chaudhary A, Zajko W, Skowronek K, Chamera S, Figiel M, Nowotny M
Nat Struct Mol Biol (2023) 30 pp. 650-660 [ DOI: doi:10.1038/s41594-023-00967-z Pubmed: 37081315 ]
- Oligo2 (12 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna replication and repair protein recf (37 kDa, Protein from Thermus thermophilus HB8)
- Complex of recf and dna from thermus thermophilus. (95 kDa, Complex from Thermus thermophilus HB8)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Oligo1 (7 kDa, DNA from synthetic construct)
Complex of RecF-RecR-DNA from Thermus thermophilus.
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8a93
Q-score: 0.525
Nirwal S, Czarnocki-Cieciura M, Chaudhary A, Zajko W, Skowronek K, Chamera S, Figiel M, Nowotny M
Nat Struct Mol Biol (2023) 30 pp. 650-660 [ DOI: doi:10.1038/s41594-023-00967-z Pubmed: 37081315 ]
- Oligo2 (12 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Complex of recf-recr-dna from thermus thermophilus. (180 kDa, Complex from Thermus thermophilus HB8)
- Dna replication and repair protein recf (37 kDa, Protein from Thermus thermophilus HB8)
- Recombination protein recr (21 kDa, Protein from Thermus thermophilus HB8)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Oligo1 (7 kDa, DNA from synthetic construct)
Complex of RecO-RecR-DNA from Thermus thermophilus.
Resolution: 6.09 Å
EM Method: Single-particle
Fitted PDBs: 8ab0
Q-score: 0.233
Nirwal S, Czarnocki-Cieciura M, Chaudhary A, Zajko W, Skowronek K, Chamera S, Figiel M, Nowotny M
Nat Struct Mol Biol (2023) 30 pp. 650-660 [ DOI: doi:10.1038/s41594-023-00967-z Pubmed: 37081315 ]
- Oligo1 (7 kDa, DNA from synthetic construct)
- Complex of reco-recr-dna from thermus thermophilus. (130 kDa, Complex from Thermus thermophilus HB8)
- Dna repair protein reco (24 kDa, Protein from Thermus thermophilus HB8)
- Recombination protein recr (21 kDa, Protein from Thermus thermophilus HB8)
- Oligo2 (12 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
Complex of RecF-RecO-RecR-DNA from Thermus thermophilus (low resolution reconstruction).
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 8bpr
Q-score: 0.359
Nirwal S, Czarnocki-Cieciura M, Chaudhary A, Zajko W, Skowronek K, Chamera S, Figiel M, Nowotny M
Nat Struct Mol Biol (2023) 30 pp. 650-660 [ DOI: doi:10.1038/s41594-023-00967-z Pubmed: 37081315 ]
- Dna replication and repair protein recf (37 kDa, Protein from Thermus thermophilus HB8)
- Complex of recf-reco-recr-dna from thermus thermophilus. (205 kDa, Complex from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Oligo1 (7 kDa, DNA from synthetic construct)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna repair protein reco (24 kDa, Protein from Thermus thermophilus HB8)
- Recombination protein recr (21 kDa, Protein from Thermus thermophilus HB8)
- Oligo2 (12 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)