Cryo-EM structure of Rotavirus B NSP2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8p00
Q-score: 0.442
Chamera S, Wycisk K, Czarnocki-Cieciura M, Nowotny M
J Virol (2024) 98 pp. e0166023-e0166023 [ Pubmed: 38421167 DOI: doi:10.1128/jvi.01660-23 ]
- Non-structural protein 2 (34 kDa, Protein from Human rotavirus B strain CAL-1)
- Homooctamer of nsp2 (Complex from Rotavirus B)
Abortive infection DNA polymerase AbiK from Lactococcus lactis
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 7r06
Q-score: 0.676
Figiel M, Gapinska M, Czarnocki-Cieciura M, Zajko W, Sroka M, Skowronek K, Nowotny M
Nucleic Acids Res (2022) 50 pp. 10026-10040 [ Pubmed: 36107766 DOI: doi:10.1093/nar/gkac772 ]
- Abortive infection protein abik (Complex from Lactococcus lactis)
- Homohexamer of abik with single-stranded dna covalently attached to each of the subunits (420 kDa, Complex)
- Dna (5'-d(*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*c)-3') (Complex from Escherichia coli)
- Abik (71 kDa, Protein from Lactococcus lactis)
- Dna (5'-d(*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*c)-3') (3 kDa, DNA from Escherichia coli)
Abortive infection DNA polymerase AbiK from Lactococcus lactis, Y44F variant
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7z0z
Q-score: 0.614
Figiel M, Gapinska M, Czarnocki-Cieciura M, Zajko W, Sroka M, Skowronek K, Nowotny M
Nucleic Acids Res (2022) 50 pp. 10026-10040 [ Pubmed: 36107766 DOI: doi:10.1093/nar/gkac772 ]
- Homohexamer of l. lactis abik y44f mutant (420 kDa, Complex from Lactococcus lactis)
- Abik (71 kDa, Protein from Lactococcus lactis)
Cryo-EM structure of E. coli TnsB in complex with right end fragment of Tn7 transposon
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7pik
Q-score: 0.586
Kaczmarska Z, Czarnocki-Cieciura M, Gorecka-Minakowska KM, Wingo RJ, Jackiewicz J, Zajko W, Poznanski JT, Rawski M, Grant T, Peters JE, Nowotny M
Mol Cell (2022) 82 pp. 2618- [ Pubmed: 35654042 DOI: doi:10.1016/j.molcel.2022.05.005 ]
- Tnsb (Complex from Escherichia coli)
- Tn7 transposon right end fragment (Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsb (81 kDa, Protein from Escherichia coli)
- Right end fragment of tn7 transposon (21 kDa, DNA from Escherichia coli)
- Tnsb-dna complex (43 kDa, Complex)
- Right end fragment of tn7 transposon (21 kDa, DNA from Escherichia coli)
Structure of the foamy viral protease-reverse transcriptase in complex with dsDNA.
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7o24
Q-score: 0.346
Nowacka M, Nowak E, Czarnocki-Cieciura M, Jackiewicz J, Skowronek K, Szczepanowski RH, Wohrl BM, Nowotny M
J Virol (2021) 95 pp. e0084821-e0084821 [ Pubmed: 34232702 DOI: doi:10.1128/JVI.00848-21 ]
- Dna (Complex from synthetic construct)
- Complex of protease-reverse transcriptase with ds dna (190 kDa, Complex)
- Pr125pol (85 kDa, Protein from White-tufted-ear marmoset simian foamy virus)
- Dna (5'-d(*tp*gp*gp*ap*ap*tp*cp*ap*gp*gp*tp*gp*tp*cp*gp*cp*ap*cp*tp*cp*tp*g)-3') (6 kDa, DNA from synthetic construct)
- Dna (5'-d(*ap*ap*cp*ap*gp*ap*gp*tp*gp*cp*gp*ap*cp*ap*cp*cp*tp*gp*ap*tp*tp*cp*cp*a)-3') (7 kDa, DNA from synthetic construct)
- Pr125pol (Complex from White-tufted-ear marmoset simian foamy virus)