Omicron BA.1 Spike protein with neutralizing NTD specific mAb K501SP6
Walker MR, Underwood A, Bjornsson KH, Raghavan SSR, Bassi MR, Binderup A, Pham LV, Ramirez S, Pinholt M, Dagil R, Knudsen AS, Idorn M, Soegaard M, Wang K, Ward AB, Salanti A, Bukh J, Barfod L
Commun Biol (2024) 7 pp. 1239-1239 [ Pubmed: 39354108 DOI: doi:10.1038/s42003-024-06951-7 ]
- Antibody (Complex from Homo sapiens)
- Alphacoronavirus (Complex)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- K501sp6 fv heavy chain (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein with fibritin (Complex from Severe acute respiratory syndrome coronavirus 2)
- K501sp6 fv light chain (14 kDa, Protein from Homo sapiens)
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8p2e
Q-score: 0.369
Vidal-Calvo EE, Martin-Salazar A, Choudhary S, Dagil R, Raghavan SSR, Duvnjak L, Nordmaj MA, Clausen TM, Skafte A, Oberkofler J, Wang K, Agerbaek MO, Loppke C, Jorgensen AM, Ropac D, Mujollari J, Willis S, Garcias Lopez A, Miller RL, Karlsson RTG, Goerdeler F, Chen YH, Colaco AR, Wang Y, Lavstsen T, Martowicz A, Nelepcu I, Marzban M, Oo HZ, Orum-Madsen MS, Wang Y, Nielsen MA, Clausen H, Wierer M, Wolf D, Gogenur I, Theander TG, Al-Nakouzi N, Gustavsson T, Daugaard M, Salanti A
Nat Commun (2024) 15 pp. 7553-7553 [ DOI: doi:10.1038/s41467-024-51781-0 Pubmed: 39215044 ]
- B1 fab light (23 kDa, Protein from Homo sapiens)
- B1 fabs bound to chondroitin sulphate a (50 MDa, Complex from Homo sapiens)
- B1 fab heavy (26 kDa, Protein from Homo sapiens)
Omicron B.1.1.529 2 RBD up conformation
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8c5r
Q-score: 0.16
Walker MR, Underwood A, Bjornsson KH, Raghavan SSR, Bassi MR, Binderup A, Pham LV, Ramirez S, Pinholt M, Dagil R, Knudsen AS, Idorn M, Soegaard M, Wang K, Ward AB, Salanti A, Bukh J, Barfod L
Commun Biol (2024) 7 pp. 1239-1239 [ Pubmed: 39354108 DOI: doi:10.1038/s42003-024-06951-7 ]
- Omicron spike trimeric complex (400 kDa, Complex from Alphacoronavirus)
- Spike glycoprotein (118 kDa, Protein from Alphacoronavirus)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7z12
Q-score: 0.362
Raghavan SSR, Dagil R, Lopez-Perez M, Conrad J, Bassi MR, Quintana MDP, Choudhary S, Gustavsson T, Wang Y, Gourdon P, Ofori MF, Christensen SB, Minja DTR, Schmiegelow C, Nielsen MA, Barfod L, Hviid L, Salanti A, Lavstsen T, Wang K
PLoS Pathog (2022) 18 pp. e1010924-e1010924 [ Pubmed: 36383559 DOI: doi:10.1371/journal.ppat.1010924 ]
- Pam1.4, light chain (25 kDa, Protein from Homo sapiens)
- Var2csa complex with pam1.4 (350 kDa, Complex from Plasmodium falciparum)
- Var2csa (235 kDa, Protein from Plasmodium falciparum)
- Pam1.4, heavy chain (51 kDa, Protein from Homo sapiens)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7z1h
Q-score: 0.315
Raghavan SSR, Dagil R, Lopez-Perez M, Conrad J, Bassi MR, Quintana MDP, Choudhary S, Gustavsson T, Wang Y, Gourdon P, Ofori MF, Christensen SB, Minja DTR, Schmiegelow C, Nielsen MA, Barfod L, Hviid L, Salanti A, Lavstsen T, Wang K
PLoS Pathog (2022) 18 pp. e1010924-e1010924 [ Pubmed: 36383559 DOI: doi:10.1371/journal.ppat.1010924 ]
- Var2csa apo (310 kDa, Complex from Plasmodium falciparum)
- Var2csa apo (235 kDa, Protein from Plasmodium falciparum)
VAR2CSA full ectodomain in present of plCS, DBL1-DBL4
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7b54
Q-score: 0.395
Wang K, Dagil R, Lavstsen T, Misra SK, Spliid CB, Wang Y, Gustavsson T, Sandoval DR, Vidal-Calvo EE, Choudhary S, Agerbaek MO, Lindorff-Larsen K, Nielsen MA, Theander TG, Sharp JS, Clausen TM, Gourdon P, Salanti A
Nat Commun (2021) 12 pp. 2956-2956 [ Pubmed: 34011972 DOI: doi:10.1038/s41467-021-23254-1 ]
Cryo-EM structure of VAR2CSA FCR3 domain DBL5/6
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7nnh
Q-score: 0.238
Wang K, Dagil R, Lavstsen T, Misra SK, Spliid CB, Wang Y, Gustavsson T, Sandoval DR, Vidal-Calvo EE, Choudhary S, Agerbaek MO, Lindorff-Larsen K, Nielsen MA, Theander TG, Sharp JS, Clausen TM, Gourdon P, Salanti A
Nat Commun (2021) 12 pp. 2956-2956 [ Pubmed: 34011972 DOI: doi:10.1038/s41467-021-23254-1 ]
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7b52
Q-score: 0.306
Wang K, Dagil R, Lavstsen T, Misra SK, Spliid CB, Wang Y, Gustavsson T, Sandoval DR, Vidal-Calvo EE, Choudhary S, Agerbaek MO, Lindorff-Larsen K, Nielsen MA, Theander TG, Sharp JS, Clausen TM, Gourdon P, Salanti A
Nat Commun (2021) 12 pp. 2956-2956 [ Pubmed: 34011972 DOI: doi:10.1038/s41467-021-23254-1 ]
- Erythrocyte membrane protein 1 (307 kDa, Protein from Plasmodium falciparum)
- Var2csa full ectodomain (Complex from Plasmodium falciparum)