Cryo-EM structure of murine Dispatched 'R' conformation
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7rph
Q-score: 0.57
Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA
Nature (2021) 599 pp. 320-324 [ Pubmed: 34707294 DOI: doi:10.1038/s41586-021-03996-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Dispatched protein 'r' conformation (151 kDa, Complex from Mus musculus)
- Sodium ion (22 Da, Ligand)
- Protein dispatched homolog 1 (152 kDa, Protein from Mus musculus)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-EM structure of murine Dispatched 'T' conformation
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7rpi
Q-score: 0.554
Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA
Nature (2021) 599 pp. 320-324 [ Pubmed: 34707294 DOI: doi:10.1038/s41586-021-03996-0 ]
- Dispatched protein 't' conformation (151 kDa, Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Sodium ion (22 Da, Ligand)
- Protein dispatched homolog 1 (152 kDa, Protein from Mus musculus)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7rpk
Q-score: 0.547
Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA
Nature (2021) 599 pp. 320-324 [ Pubmed: 34707294 DOI: doi:10.1038/s41586-021-03996-0 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Sulfate ion (96 Da, Ligand)
- Dispatched protein complexed with sonic hedgehog 26-189 (151 kDa, Complex from Mus musculus)
- Sodium ion (22 Da, Ligand)
- Sonic hedgehog protein (18 kDa, Protein from Mus musculus)
- Protein dispatched homolog 1 (152 kDa, Protein from Mus musculus)
- Cholesterol hemisuccinate (486 Da, Ligand)
- (2s)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate (411 Da, Ligand)
- Water (18 Da, Ligand)
CryoEM Structure of Pyocin R2 - precontracted - trunk
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6pyt
Q-score: 0.549
Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH
Nature (2020) 580 pp. 658-662 [ Pubmed: 32350467 DOI: doi:10.1038/s41586-020-2186-z ]
- Pyocin r2 (Cellular component from Pseudomonas aeruginosa PAO1)
- Pyocin sheath pa0622 (41 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
- Pyocin tube pa0623 (17 kDa, Protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Cryo-EM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution