Cryo-EM structure of Tdk1-Bdf1 complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ja5
Q-score: 0.524
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8iyq
Q-score: 0.513
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Structure of cbcas9 bound to 20-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wmh
Q-score: 0.279
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Structure of cbcas9 bound to 6-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8wmm
Q-score: 0.342
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Magnesium ion (24 Da, Ligand)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary) (469 kDa, Complex from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8wmn
Q-score: 0.274
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (symmetric 20-nt complementary) (471 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
- Dna (62-mer) (19 kDa, DNA from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8wr4
Q-score: 0.289
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ Pubmed: 38811729 DOI: doi:10.1038/s41586-024-07486-x ]
- Magnesium ion (24 Da, Ligand)
- Dna (62-mer) (18 kDa, DNA from Chryseobacterium)
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Cbcas9 effector-1 (170 kDa, Protein from Chryseobacterium)
- Sgrna effector-2 (40 kDa, RNA from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 62-bp dna substrate (non-targeting complex) (471 kDa, Complex from Chryseobacterium)
- Dna (62-mer) (19 kDa, DNA from Chryseobacterium)
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Global map
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8iah
Q-score: 0.385
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ DOI: doi:10.1016/j.cell.2023.03.017 Pubmed: 37044097 ]
- Spectrin beta chain (248 kDa, Protein from Sus scrofa)
- Beta-adducin (80 kDa, Protein from Sus scrofa)
- Tropomodulin-1 (40 kDa, Protein from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Adducin 1 (81 kDa, Protein from Sus scrofa)
- Spectrin alpha, erythrocytic 1 (281 kDa, Protein from Sus scrofa)
- Tropomyosin 3 (29 kDa, Protein from Sus scrofa)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Tropomyosin-1.9 (28 kDa, Protein from Sus scrofa)
- Sh3 domain-binding glutamic acid-rich-like protein (12 kDa, Protein from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Global map
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8iai
Q-score: 0.411
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Spectrin beta chain (248 kDa, Protein from Sus scrofa)
- Tropomyosin-1.9 (28 kDa, Protein from Sus scrofa)
- Adducin 1 (81 kDa, Protein from Sus scrofa)
- Beta-adducin (80 kDa, Protein from Sus scrofa)
- Tropomyosin 3 (29 kDa, Protein from Sus scrofa)
- Sh3 domain-binding glutamic acid-rich-like protein (12 kDa, Protein from Sus scrofa)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Tropomodulin-1 (40 kDa, Protein from Sus scrofa)