Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ib2
Q-score: 0.5
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7vcf
Q-score: 0.589
Jin Z, Wan L, Zhang Y, Li X, Cao Y, Liu H, Fan S, Cao D, Wang Z, Li X, Pan J, Dong MQ, Wu J, Yan Z
Cell (2022) 185 pp. 4788-4800.e13 [ Pubmed: 36413996 DOI: doi:10.1016/j.cell.2022.10.030 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Tic214 (232 kDa, Protein from Chlamydomonas reinhardtii)
- Toc120 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Tic35 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Toc-tic supercomplex (Complex from Chlamydomonas reinhardtii)
- Toc10 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Tic56 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Tic100 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Ylmg (21 kDa, Protein from Chlamydomonas reinhardtii)
- Toc75 (87 kDa, Protein from Chlamydomonas reinhardtii)
- Toc52 (52 kDa, Protein from Chlamydomonas reinhardtii)
- Toc34 (44 kDa, Protein from Chlamydomonas reinhardtii)
- Tic13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Toc39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Unknown fragment (2 kDa, Protein from Chlamydomonas reinhardtii)
- Tic20-venus-flag (60 kDa, Protein from Chlamydomonas reinhardtii)
- Inositol hexakisphosphate (660 Da, Ligand)
- Tic12 (14 kDa, Protein from Chlamydomonas reinhardtii)
Tra1 subunit from Saccharomyces cerevisiae SAGA complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6ig9
Q-score: 0.315
Liu G, Zheng X, Guan H, Cao Y, Qu H, Kang J, Ren X, Lei J, Dong MQ, Li X, Li H
Cell Discov (2019) 5 pp. 25-25 [ Pubmed: 31069110 DOI: doi:10.1038/s41421-019-0094-x ]
- Tra1 / sctra1 (1 MDa, Complex from Saccharomyces cerevisiae)
- Transcription-associated protein 1 (433 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 5z3g
Q-score: 0.422
Zhou D, Zhu X, Zheng S, Tan D, Dong MQ, Ye K
Protein Cell (2019) 10 pp. 120-130 [ DOI: doi:10.1007/s13238-018-0526-7 Pubmed: 29557065 ]
- Rpf1-tap pre-60s (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288c)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288c)
- Rrna-processing protein ebp2 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Its2 rna (74 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae S288c)
- Unassigned (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Nucleolar protein 7 (69 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae S288c)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288c)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5h64
Q-score: 0.249
Yang H, Wang J, Liu M, Chen X, Huang M, Tan D, Dong MQ, Wong CC, Wang J, Xu Y, Wang HW
Protein Cell (2016) 7 pp. 878-887 [ DOI: doi:10.1007/s13238-016-0346-6 Pubmed: 27909983 ]
- Target of rapamycin complex subunit lst8 (35 kDa, Protein from Homo sapiens)
- Human mtor complex 1 (1 MDa, Complex from Homo sapiens)
- Serine/threonine-protein kinase mtor (289 kDa, Protein from Homo sapiens)
- Regulatory-associated protein of mtor (149 kDa, Protein from Homo sapiens)