Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State I, Global map
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8iah
Q-score: 0.385
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Tropomodulin-1 (40 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Spectrin beta chain (248 kDa, Protein from Sus scrofa)
- Sh3 domain-binding glutamic acid-rich-like protein (12 kDa, Protein from Sus scrofa)
- Beta-adducin (80 kDa, Protein from Sus scrofa)
- Tropomyosin-1.9 (28 kDa, Protein from Sus scrofa)
- Spectrin alpha, erythrocytic 1 (281 kDa, Protein from Sus scrofa)
- Tropomyosin 3 (29 kDa, Protein from Sus scrofa)
- Adducin 1 (81 kDa, Protein from Sus scrofa)
Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Global map
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8iai
Q-score: 0.411
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Tropomodulin-1 (40 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Spectrin beta chain (248 kDa, Protein from Sus scrofa)
- Sh3 domain-binding glutamic acid-rich-like protein (12 kDa, Protein from Sus scrofa)
- Beta-adducin (80 kDa, Protein from Sus scrofa)
- Tropomyosin-1.9 (28 kDa, Protein from Sus scrofa)
- Tropomyosin 3 (29 kDa, Protein from Sus scrofa)
- Adducin 1 (81 kDa, Protein from Sus scrofa)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ib2
Q-score: 0.5
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
Cryo-EM structure of Chlamydomonas TOC-TIC supercomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7vcf
Q-score: 0.589
Jin Z, Wan L, Zhang Y, Li X, Cao Y, Liu H, Fan S, Cao D, Wang Z, Li X, Pan J, Dong MQ, Wu J, Yan Z
Cell (2022) 185 pp. 4788-4800.e13 [ Pubmed: 36413996 DOI: doi:10.1016/j.cell.2022.10.030 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Tic214 (232 kDa, Protein from Chlamydomonas reinhardtii)
- Toc120 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Tic35 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Toc-tic supercomplex (Complex from Chlamydomonas reinhardtii)
- Toc10 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Tic56 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Tic100 (107 kDa, Protein from Chlamydomonas reinhardtii)
- Ylmg (21 kDa, Protein from Chlamydomonas reinhardtii)
- Toc75 (87 kDa, Protein from Chlamydomonas reinhardtii)
- Toc52 (52 kDa, Protein from Chlamydomonas reinhardtii)
- Toc34 (44 kDa, Protein from Chlamydomonas reinhardtii)
- Tic13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Toc39 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Unknown fragment (2 kDa, Protein from Chlamydomonas reinhardtii)
- Tic20-venus-flag (60 kDa, Protein from Chlamydomonas reinhardtii)
- Inositol hexakisphosphate (660 Da, Ligand)
- Tic12 (14 kDa, Protein from Chlamydomonas reinhardtii)
Tra1 subunit from Saccharomyces cerevisiae SAGA complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6ig9
Q-score: 0.315
Liu G, Zheng X, Guan H, Cao Y, Qu H, Kang J, Ren X, Lei J, Dong MQ, Li X, Li H
Cell Discov (2019) 5 pp. 25-25 [ Pubmed: 31069110 DOI: doi:10.1038/s41421-019-0094-x ]
- Tra1 / sctra1 (1 MDa, Complex from Saccharomyces cerevisiae)
- Transcription-associated protein 1 (433 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 5z3g
Q-score: 0.422
Zhou D, Zhu X, Zheng S, Tan D, Dong MQ, Ye K
Protein Cell (2019) 10 pp. 120-130 [ DOI: doi:10.1007/s13238-018-0526-7 Pubmed: 29557065 ]
- Rpf1-tap pre-60s (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288c)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae S288c)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288c)
- Rrna-processing protein ebp2 (49 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Saccharomyces cerevisiae S288c)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Saccharomyces cerevisiae S288c)
- Its2 rna (74 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Saccharomyces cerevisiae S288c)
- Unassigned (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Nucleolar protein 7 (69 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288c)
- Protein mak16 (35 kDa, Protein from Saccharomyces cerevisiae S288c)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288c)
- Ribosome production factor 1 (35 kDa, Protein from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288c)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5h64
Q-score: 0.249
Yang H, Wang J, Liu M, Chen X, Huang M, Tan D, Dong MQ, Wong CC, Wang J, Xu Y, Wang HW
Protein Cell (2016) 7 pp. 878-887 [ DOI: doi:10.1007/s13238-016-0346-6 Pubmed: 27909983 ]
- Target of rapamycin complex subunit lst8 (35 kDa, Protein from Homo sapiens)
- Human mtor complex 1 (1 MDa, Complex from Homo sapiens)
- Serine/threonine-protein kinase mtor (289 kDa, Protein from Homo sapiens)
- Regulatory-associated protein of mtor (149 kDa, Protein from Homo sapiens)
Cryo-EM structure of yeast cytoplasmic exosome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5g06
Q-score: 0.221
Liu JJ, Niu CY, Wu Y, Tan D, Wang Y, Ye MD, Liu Y, Zhao WW, Zhou K, Liu QS, Dai JB, Yang XR, Dong MQ, Huang N, Wang HW
Cell Res (2016) 26 pp. 822-837 [ DOI: doi:10.1038/CR.2016.56 Pubmed: 27174052 ]
- Exosome-ski7 complex (420 kDa, Sample)
- Exossome-ski7 complex (420 kDa, Protein from Saccharomyces cerevisiae)