BA.2.86 RBD protein in complex with ACE2.
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8yzb
Q-score: 0.477
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
- Angiotensin-converting enzyme 2 (85 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin,fusion protein (142 kDa, Protein from synthetic construct)
- Ba.2.86 rbd protein in complex with ace2 (Complex from Homo sapiens)
Structure of BA.2.86 spike protein in complex with ACE2.
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8yzc
Q-score: 0.267
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
Structure of JN.1 RBD protein in complex with ACE2.
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yzd
Q-score: 0.573
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
The JN.1 spike protein (S) in complex with ACE2.
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8yze
Q-score: 0.25
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ DOI: doi:10.1038/s41467-024-53033-7 Pubmed: 39379369 ]
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9co6
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Nanosota-9 (Complex from Vicugna pacos)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local refinement of BA.5 spike/Nanosota-9 complex
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9co7
Q-score: 0.44
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Ba.5 spike/nanosota-9 complex (Complex)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Ba.5 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9co8
Q-score: 0.402
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
Local refinement of JN.1 spike/Nanosota-9 complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9co9
Q-score: 0.438
Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F
PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ DOI: doi:10.1371/journal.ppat.1012726 Pubmed: 39591462 ]
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (Complex from Vicugna pacos)
- Jn.1 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanosota-9 (16 kDa, Protein from Vicugna pacos)
- Jn.1 spike/nanosota-9 complex (Complex)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8thf
Q-score: 0.461